{"id":"W2041476574","doi":"10.1142/9781860947292_0028","title":"IDENTIFICATION OF OVER-REPRESENTED COMBINATIONS OF TRANSCRIPTION FACTOR BINDING SITES IN SETS OF CO-EXPRESSED GENES","year":2005,"lang":"en","type":"article","venue":"","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Merck Canada Inc. (Canada); Child and Family Research Institute; University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Merck","keywords":"Transcription factor; Identification (biology); Gene; Computational biology; Genetics; Computer science; Biology; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001425819,0.0006209015,0.001341142,0.002927497,0.001035743,0.001443375,0.0008527251,0.0008472678,0.001296555],"category_scores_gemma":[0.005167824,0.0004242488,0.0009420728,0.002116514,0.0008251825,0.0008234199,0.001049723,0.0006899087,0.0004952821],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005564558,"about_ca_system_score_gemma":0.0005372014,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002640618,"about_ca_topic_score_gemma":0.004950034,"domain_scores_codex":[0.9987671,0.0002729635,0.00008703794,0.0004462817,0.0003102011,0.0001163976],"domain_scores_gemma":[0.9971337,0.001738404,0.0003868796,0.0003940584,0.0002158093,0.0001309696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001572335,0.0002539329,0.1978791,0.0007601781,0.0008119747,0.001485861,0.001230658,0.1057329,0.2995977,0.00869964,0.003165311,0.3788104],"study_design_scores_gemma":[0.00009299126,0.0001766179,0.08288871,0.0001137721,0.0006811059,0.004719571,0.0005272581,0.7939112,0.08979622,0.01879461,0.008185217,0.0001127855],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6937096,0.0007633148,0.3012888,0.0001281598,0.00002556072,0.0000626474,0.000905023,0.001608174,0.00150874],"genre_scores_gemma":[0.7000055,0.0003552267,0.2952055,0.00008169809,0.00002947328,0.00007408875,0.003073954,0.0002302864,0.0009443136],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002927497,"threshold_uncertainty_score":0.007540524,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01301219714257379,"score_gpt":0.2718560800051394,"score_spread":0.2588438828625656,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}