{"id":"W2042107869","doi":"10.1016/j.jmb.2005.03.024","title":"Genetic and Molecular Analysis of GogB, a Phage-encoded Type III-secreted Substrate in Salmonella enterica Serovar Typhimurium with Autonomous Expression from its Associated Phage","year":2005,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":72,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Salmonella enterica; Serotype; Salmonella; Microbiology; Biology; Bacteria; Bacteriophage; Enterobacteriaceae; Substrate (aquarium); Genetics; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001414788,0.0005755931,0.0002681342,0.0003589656,0.0001922306,0.000320403,0.0002783506,0.0003770783,0.000364062],"category_scores_gemma":[0.0001927105,0.0002461573,0.0005679655,0.0002475317,0.0004044964,0.0001690425,0.000324026,0.0006792131,0.000349909],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003638754,"about_ca_system_score_gemma":0.0003085433,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002613806,"about_ca_topic_score_gemma":0.002733671,"domain_scores_codex":[0.9998965,0.00001917494,0.00000922787,0.00001722057,0.00002359235,0.00003425024],"domain_scores_gemma":[0.9997324,0.00006975808,0.00005195538,0.00003098648,0.0000301534,0.0000847349],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009937597,0.00001954805,0.000195363,0.00001682533,0.000003753974,0.00005113247,0.00001376535,0.00003570354,0.9993473,0.00005378209,0.00001084535,0.0001526666],"study_design_scores_gemma":[0.00005044207,0.0006398238,0.03787771,0.00001390231,0.00007708732,0.001074126,0.0003113663,0.002535522,0.9551361,0.0001401276,0.002122781,0.00002101612],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972982,0.0002828504,0.001459217,0.00006700965,0.00001678456,0.00001158036,0.0003970259,0.00002544314,0.0004420425],"genre_scores_gemma":[0.9938629,0.0002382439,0.001670515,0.00005514571,0.000008242361,0.00001819408,0.002284755,0.00003683775,0.00182512],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002613806,"threshold_uncertainty_score":0.005197167,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005982418872007972,"score_gpt":0.2391479653877792,"score_spread":0.2331655465157713,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}