{"id":"W2042107869","doi":"10.1016/j.jmb.2005.03.024","title":"Genetic and Molecular Analysis of GogB, a Phage-encoded Type III-secreted Substrate in Salmonella enterica Serovar Typhimurium with Autonomous Expression from its Associated Phage","year":2005,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":72,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Salmonella enterica; Serotype; Salmonella; Microbiology; Biology; Bacteria; Bacteriophage; Enterobacteriaceae; Substrate (aquarium); Genetics; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001400948,0.0001576464,0.0004191675,0.0001771687,0.00002800176,0.00001586087,0.0001811208,0.0001309943,0.0005713196],"category_scores_gemma":[0.00002696579,0.0001272737,0.0001141655,0.0004608431,0.00009260063,0.00009191142,0.00008004296,0.0002058827,0.000007505661],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001025201,"about_ca_system_score_gemma":0.00002333464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002467853,"about_ca_topic_score_gemma":0.0002077976,"domain_scores_codex":[0.9987829,0.0001924952,0.0004855257,0.0002293294,0.0001020174,0.0002077716],"domain_scores_gemma":[0.9991725,0.0000322288,0.0005076337,0.0001485712,0.00004712591,0.00009193215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001729463,0.00013315,0.006147741,0.000001681511,0.0003367261,0.0001371572,0.000172035,0.002848427,0.9895543,0.000001003673,0.00001531247,0.0004795233],"study_design_scores_gemma":[0.00160044,0.0006235864,0.232602,0.00005177836,0.000595187,0.00006255604,0.00006129974,0.003002098,0.7609268,0.00002525308,0.0002237079,0.000225255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972288,0.0004791835,0.001910461,0.0001031454,0.00005285729,0.0000911272,0.00002352275,0.00000545325,0.0001054581],"genre_scores_gemma":[0.9963416,0.0001162557,0.003292478,0.000174087,0.00001298378,0.000001493153,0.00002098708,0.00001314931,0.0000269516],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2286275,"threshold_uncertainty_score":0.6255549,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005982418872007972,"score_gpt":0.2391479653877792,"score_spread":0.2331655465157713,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}