{"id":"W2042422601","doi":"10.1128/jb.183.14.4183-4189.2001","title":"Identification of a DNA Binding Region in GerE from <i>Bacillus subtilis</i>","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"York University; National Science Foundation","keywords":"Biology; Bacillus subtilis; Binding site; Alanine; DNA; Biochemistry; Threonine; Mutant; DNA-binding protein; Conserved sequence; DNA-binding domain; Amino acid; Peptide sequence; Molecular biology; Genetics; Serine; Transcription factor; Gene; Phosphorylation; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002051479,0.0003095109,0.0003835356,0.000177461,0.0001900118,0.0003099928,0.0002913878,0.0004864909,0.001229804],"category_scores_gemma":[0.0003264628,0.0002532471,0.0004768033,0.0001206536,0.0003264806,0.0001425249,0.0002493621,0.0006863892,0.0006905237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003849342,"about_ca_system_score_gemma":0.0002495007,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001227701,"about_ca_topic_score_gemma":0.001605152,"domain_scores_codex":[0.999764,0.00005533185,0.00002118268,0.00004856529,0.00006885451,0.00004199305],"domain_scores_gemma":[0.9996748,0.0001032915,0.00008009418,0.00003228484,0.00003146162,0.00007810834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001041717,0.00003292034,0.0002623896,0.0000267409,0.000004629982,0.00005147836,0.00001228996,0.00008383243,0.9987835,0.00002301539,0.0000131816,0.0006017397],"study_design_scores_gemma":[0.00003822955,0.0004464173,0.0185001,0.00001782392,0.00003344549,0.0009529933,0.00004947573,0.001238029,0.976617,0.00002985079,0.002056754,0.00001995273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962634,0.0005085009,0.002091741,0.00009515426,0.00002347053,0.00003010781,0.0003829648,0.00003996061,0.0005645594],"genre_scores_gemma":[0.9911913,0.0002073541,0.005099401,0.0001399291,0.00001621699,0.00002992278,0.00211354,0.00004032721,0.001161959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001229804,"threshold_uncertainty_score":0.004114091,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01180567184078743,"score_gpt":0.2312974204151454,"score_spread":0.2194917485743579,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}