{"id":"W2042558677","doi":"10.1371/journal.pone.0043035","title":"SNP-SNP Interactions Discovered by Logic Regression Explain Crohn's Disease Genetics","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates; Mitsubishi Foundation; Alberta Cancer Foundation","keywords":"Genome-wide association study; SNP; Single-nucleotide polymorphism; Genetic association; Genetics; Tag SNP; Biology; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009420155,0.001724392,0.002263502,0.002397137,0.0009574869,0.003098184,0.001930315,0.00139482,0.006744734],"category_scores_gemma":[0.03724005,0.001056526,0.003701282,0.00287333,0.002318776,0.002459661,0.002619904,0.002702666,0.001074377],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006185102,"about_ca_system_score_gemma":0.001030352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003280544,"about_ca_topic_score_gemma":0.002328182,"domain_scores_codex":[0.9918691,0.004138998,0.0003921395,0.002285152,0.0007859195,0.0005287307],"domain_scores_gemma":[0.9745244,0.02015125,0.002446746,0.001885619,0.0005690728,0.0004228654],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.004924331,0.0002425735,0.6891407,0.001100168,0.009527982,0.008234069,0.001393446,0.07618992,0.01687892,0.06230452,0.006907839,0.1231556],"study_design_scores_gemma":[0.0007302391,0.0006891867,0.1739205,0.0002239115,0.004337209,0.004469788,0.0005856517,0.4694233,0.004170234,0.3279942,0.01319028,0.0002655064],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5290342,0.007138104,0.4441448,0.006034993,0.0003638928,0.000222564,0.002841622,0.002852714,0.007367065],"genre_scores_gemma":[0.9657187,0.0008291843,0.02904506,0.001162339,0.0002880789,0.0001396562,0.001044566,0.0003155014,0.001457008],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009420155,"threshold_uncertainty_score":0.04981917,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03917304583272699,"score_gpt":0.2726535747182998,"score_spread":0.2334805288855728,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}