{"id":"W2042756476","doi":"10.1089/cmb.2010.0108","title":"Mosaic Graphs and Comparative Genomics in Phage Communities","year":2010,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Montréal","funders":"National Center for Research Resources; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Science Foundation","keywords":"Genome; Biology; Metagenomics; Comparative genomics; Genomics; Bacterial genome size; Genetics; Computational biology; Mosaic; Recombination; Horizontal gene transfer; Evolutionary biology; Gene; Geography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000126695,0.00004842127,0.0001138743,0.0000552084,0.00004758827,0.00001239368,0.00008614481,0.0000385681,0.0004120304],"category_scores_gemma":[0.000004826288,0.00004069866,0.0000262515,0.0000501505,0.000205132,0.0001097405,0.00004701464,0.0002778294,0.00001396721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002154342,"about_ca_system_score_gemma":0.00001146895,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001354575,"about_ca_topic_score_gemma":0.0006056805,"domain_scores_codex":[0.999621,0.00004729379,0.0001953835,0.00003835847,0.00003147456,0.00006648822],"domain_scores_gemma":[0.999655,0.0001378933,0.0001273474,0.00003039429,0.00001880426,0.00003057516],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001149519,0.0002654067,0.0628891,0.000004104471,0.0000558361,0.00001353271,0.004607255,0.01148017,0.9057089,0.006499947,0.001569147,0.006791607],"study_design_scores_gemma":[0.000895838,0.0002805393,0.9313976,0.00001022944,0.00001135654,0.0007361037,0.000771029,0.002498266,0.001477914,0.03559064,0.02618267,0.0001478768],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985905,0.00002685249,0.0002690268,0.0002320994,0.0002024155,0.00003051288,0.0000103387,0.000001893984,0.0006363702],"genre_scores_gemma":[0.9946226,0.00001750853,0.00512814,0.0001846622,0.00001732799,5.140916e-7,0.000009092297,0.000001679296,0.00001848249],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.904231,"threshold_uncertainty_score":0.4511444,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02156788109663513,"score_gpt":0.2827949033140972,"score_spread":0.2612270222174621,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}