{"id":"W2042756476","doi":"10.1089/cmb.2010.0108","title":"Mosaic Graphs and Comparative Genomics in Phage Communities","year":2010,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Montréal","funders":"National Center for Research Resources; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Science Foundation","keywords":"Genome; Biology; Metagenomics; Comparative genomics; Genomics; Bacterial genome size; Genetics; Computational biology; Mosaic; Recombination; Horizontal gene transfer; Evolutionary biology; Gene; Geography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002150359,0.0003480598,0.0004960825,0.006099684,0.00129787,0.001492326,0.000669407,0.0008985967,0.0020268],"category_scores_gemma":[0.01270077,0.0003904508,0.0008552709,0.005444997,0.003097897,0.002959295,0.002000007,0.0006640941,0.0001518185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001548662,"about_ca_system_score_gemma":0.000674071,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003482964,"about_ca_topic_score_gemma":0.003213025,"domain_scores_codex":[0.9985889,0.0008324219,0.00005274653,0.0002720445,0.0001714592,0.00008248187],"domain_scores_gemma":[0.9919205,0.006349007,0.0006540246,0.0004904874,0.0002632613,0.0003228305],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0004343152,0.000106951,0.01897861,0.0005185371,0.0002560993,0.0005840581,0.003391516,0.161202,0.0105103,0.726251,0.001625113,0.07614155],"study_design_scores_gemma":[0.00003822013,0.0000484246,0.007393086,0.00005386407,0.00004712791,0.0002893039,0.0005075118,0.1732363,0.001411575,0.8099687,0.006966529,0.00003928288],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5830113,0.003292674,0.4012155,0.001153866,0.00005612643,0.00009258169,0.001030655,0.0006788421,0.009468411],"genre_scores_gemma":[0.8714992,0.0006884378,0.1257093,0.0001175258,0.00004743068,0.0001097492,0.001053944,0.00006988421,0.0007044566],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006099684,"threshold_uncertainty_score":0.01137233,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02156788109663513,"score_gpt":0.2827949033140972,"score_spread":0.2612270222174621,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}