{"id":"W2042794984","doi":"10.1007/s002390010225","title":"A Complex Organization of the Gene Encoding Cytochrome Oxidase Subunit 1 in the Mitochondrial Genome of the Dinoflagellate, Crypthecodinium cohnii: Homologous Recombination Generates Two Different cox1 Open Reading Frames","year":2001,"lang":"en","type":"article","venue":"Journal of Molecular Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Genetics; Mitochondrial DNA; Inverted repeat; Direct repeat; Gene; Genome; Open reading frame; Reading frame; Homologous recombination; Coding region; Cytochrome c oxidase subunit I; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000424644,0.0001354889,0.000222775,0.0000795488,0.0001753928,0.00003966454,0.0009133961,0.0001200379,0.00002190077],"category_scores_gemma":[0.000227422,0.00008374621,0.0001438246,0.000380735,0.0001206279,0.00001927742,0.0002998869,0.0001928825,6.063021e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009154002,"about_ca_system_score_gemma":0.0001072064,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000758981,"about_ca_topic_score_gemma":0.00003176176,"domain_scores_codex":[0.9984174,0.0005512662,0.0004449039,0.0001527625,0.0002772794,0.0001563932],"domain_scores_gemma":[0.9985883,0.00003057029,0.0006773408,0.0003284919,0.0003450648,0.00003022159],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009841489,0.0001458871,0.02227084,0.00001244357,0.0000592459,0.000007639806,0.0002069052,0.001483223,0.9752849,0.000283854,0.00008306809,0.00006361223],"study_design_scores_gemma":[0.001350029,0.0002459275,0.2969699,0.00005427881,0.00008520493,0.0002040682,0.0001476422,0.0001213334,0.6994905,0.001118419,0.00009408135,0.0001186387],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919553,0.0002730573,0.00660712,0.0003659721,0.0002206028,0.0004602128,0.00001831481,0.000001570284,0.00009783937],"genre_scores_gemma":[0.9992211,0.0001274473,0.0003722294,0.0001041255,0.00009873515,0.000003238275,0.00003245796,0.0000119287,0.0000287034],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2757944,"threshold_uncertainty_score":0.3415072,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01548705685884832,"score_gpt":0.2430715663187826,"score_spread":0.2275845094599343,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}