{"id":"W2042840488","doi":"10.1186/1471-2199-8-77","title":"PlasmaDNA: a free, cross-platform plasmid manipulation program for molecular biology laboratories","year":2007,"lang":"en","type":"article","venue":"BMC Molecular Biology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Computer Research Institute of Montréal","funders":"Helsingin Yliopisto","keywords":"Cloning (programming); Computational biology; Restriction digest; Biology; In silico; Molecular cloning; Computer science; Primer (cosmetics); Synthetic biology; Restriction site; Plasmid; Genetics; DNA; Restriction enzyme; Programming language; Gene; Complementary DNA; Physics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002122112,0.001774363,0.0009512319,0.001830402,0.0008744177,0.001357401,0.002907654,0.001319821,0.0435064],"category_scores_gemma":[0.004619271,0.00187707,0.001057221,0.001239798,0.000553517,0.002237605,0.002350401,0.002988207,0.03947501],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000508304,"about_ca_system_score_gemma":0.001149269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004605418,"about_ca_topic_score_gemma":0.0004408426,"domain_scores_codex":[0.9987077,0.0001994215,0.0001446138,0.0002929293,0.0005524275,0.00010297],"domain_scores_gemma":[0.9984748,0.0005805189,0.0002516605,0.0002635461,0.0002515183,0.0001780636],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002593942,0.0004083099,0.002664179,0.002927907,0.0002489547,0.000967372,0.0008709782,0.002499432,0.2484978,0.009041286,0.2625031,0.466777],"study_design_scores_gemma":[0.0008610225,0.0006063561,0.003604776,0.0003740165,0.000165963,0.002144186,0.00008812179,0.0145793,0.2194372,0.008670039,0.7492307,0.0002381717],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.006538838,0.0008790102,0.614708,0.0003661779,0.0002769605,0.0009265076,0.01894283,0.3495946,0.007767105],"genre_scores_gemma":[0.02788448,0.001631363,0.8147743,0.0006955943,0.0001514333,0.004955076,0.05645294,0.07222169,0.02123305],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.0435064,"threshold_uncertainty_score":0.1455433,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01619588502550573,"score_gpt":0.3623711031758639,"score_spread":0.3461752181503581,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}