{"id":"W2042896900","doi":"10.1038/modpathol.3800527","title":"Cell reservoirs in lymph nodes infected with HIV-1 subtype E differ from subtype B: identification by combined in situ polymerase chain reaction and immunohistochemistry","year":2005,"lang":"en","type":"article","venue":"Modern Pathology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Centers for Disease Control and Prevention; National Institutes of Health; National Center for Genetic Engineering and Biotechnology","keywords":"Lymph; Germinal center; Biology; Histiocyte; Lymph node; Pathology; Immunohistochemistry; Follicular dendritic cells; Immunophenotyping; Langerhans cell; Reverse transcriptase; Dendritic cell; Virology; Polymerase chain reaction; B cell; Immunology; T cell; Flow cytometry; Medicine; Antigen-presenting cell; Antigen; Antibody; Immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001691925,0.0002007055,0.0002902955,0.0001633745,0.00008441959,0.00001398017,0.0001251632,0.0003193026,0.0000694956],"category_scores_gemma":[0.00004239282,0.0001817241,0.00002482126,0.000135681,0.0002098389,0.0001033585,0.00006064426,0.0003127056,0.0002137235],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001891847,"about_ca_system_score_gemma":0.00006108084,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008332108,"about_ca_topic_score_gemma":0.0004936484,"domain_scores_codex":[0.9984848,0.0002907701,0.0002978567,0.0004846104,0.00004609538,0.0003958099],"domain_scores_gemma":[0.9993458,0.0001140474,0.0001078215,0.0003585385,0.00003781781,0.00003599514],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009998886,0.0005426048,0.1119476,0.0000105256,0.00002608987,0.00006691649,0.0006908994,0.000005804181,0.8841213,0.000004886936,0.0001927645,0.001390737],"study_design_scores_gemma":[0.007283049,0.0001499638,0.5071219,0.00002595353,0.00002275168,0.0000538179,0.000106094,0.0000951394,0.4846571,0.0001129637,0.0001374781,0.000233796],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941276,0.00443442,0.0001629126,0.0005031667,0.00004529013,0.0002382963,0.0001498561,0.00004304734,0.0002954272],"genre_scores_gemma":[0.9950734,0.0002065119,0.00004019061,0.00004657872,0.00001014013,0.00009520938,0.00277615,0.00002185736,0.001729942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3994642,"threshold_uncertainty_score":0.7410494,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006462962093162041,"score_gpt":0.2251266298320643,"score_spread":0.2186636677389022,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}