{"id":"W2043053060","doi":"10.1074/jbc.m112.354837","title":"Structural Characterization of Closely Related O-antigen Lipopolysaccharide (LPS) Chain Length Regulators","year":2012,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; McGill University","funders":"Canadian Institutes of Health Research; University of Saskatchewan","keywords":"Periplasmic space; Shigella flexneri; Biology; Transmembrane protein; Transmembrane domain; Chemistry; Biophysics; Biochemistry; Membrane; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002213224,0.0001128177,0.0002152377,0.00001402319,0.00005104954,0.00001035835,0.0001828875,0.0001651898,0.003375151],"category_scores_gemma":[0.00006615664,0.00007793778,0.0001418894,0.00008543888,0.0001326358,0.0002571327,0.00007925484,0.000234364,0.00001973256],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007457641,"about_ca_system_score_gemma":0.000007564189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001026423,"about_ca_topic_score_gemma":2.433622e-7,"domain_scores_codex":[0.999069,0.00003429413,0.0004822482,0.00009859413,0.0001144854,0.0002014042],"domain_scores_gemma":[0.9991505,0.00002424883,0.0005718063,0.0001047321,0.00002238346,0.0001262852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003439595,0.00005115144,0.02422421,0.000005213686,0.00002284061,0.000001982004,0.00008810062,0.000004500555,0.9738542,0.000006550884,0.00003789434,0.001668979],"study_design_scores_gemma":[0.0001170145,0.00003691949,0.3375173,0.0000156619,0.00001084213,0.0001078148,0.00003204242,0.00001202863,0.6609809,0.00001971241,0.001074931,0.00007485619],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990194,0.00006259017,0.00001799064,0.000106327,0.0002477941,0.00003967579,0.00001232185,0.000008815438,0.0004850804],"genre_scores_gemma":[0.9992428,0.0001097092,0.000167687,0.00003877508,0.0001778498,5.267566e-7,0.00001281355,0.000006359085,0.0002434128],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3132931,"threshold_uncertainty_score":0.9975359,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01403463760138969,"score_gpt":0.2310784798362936,"score_spread":0.2170438422349039,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}