{"id":"W2043466583","doi":"10.3382/ps.2009-00148","title":"Novel avian leukosis virus-related endogenous proviruses from layer chickens: Characterization and development of locus-specific assays","year":2009,"lang":"en","type":"article","venue":"Poultry Science","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Nova Scotia Department of Agriculture","funders":"Canada Research Chairs","keywords":"Endogenous retrovirus; Biology; Genome; Long terminal repeat; Endogeny; Genetics; Locus (genetics); Gene; Virus; Vertebrate; Virology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002019625,0.0001409974,0.000200871,0.0001721597,0.000276146,0.00004127567,0.00009104385,0.00006805317,0.0000558852],"category_scores_gemma":[0.00006036564,0.0001136623,0.00002578813,0.0005046474,0.0001756144,0.0002675038,0.00002702173,0.0001004949,0.00004521975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001126467,"about_ca_system_score_gemma":0.0002710367,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001118438,"about_ca_topic_score_gemma":0.00001060178,"domain_scores_codex":[0.99876,0.0000125426,0.0003100744,0.0003563051,0.0003283776,0.0002327445],"domain_scores_gemma":[0.9993659,0.00002923123,0.0001200706,0.0002219723,0.0001236259,0.0001392288],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002133183,0.0003847581,0.04387398,0.000004571566,0.00002136958,0.000004997986,0.0009117056,0.000001110162,0.8110924,0.00006331153,0.000001849824,0.1436186],"study_design_scores_gemma":[0.0009148467,0.0001205234,0.6425585,0.00007921005,0.00002704126,0.00003212391,0.00009316192,0.00004114386,0.3506953,0.00002540612,0.005279459,0.0001332727],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948429,0.0001068805,0.002937402,0.00009663336,0.0001162846,0.0002934531,0.00003645084,0.00005253793,0.001517435],"genre_scores_gemma":[0.9943388,0.00008262103,0.005252872,0.0001560313,0.00002681713,0.000008672632,0.00004541997,0.000008100496,0.00008064562],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5986845,"threshold_uncertainty_score":0.4635015,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05327094861781911,"score_gpt":0.2702796782780281,"score_spread":0.217008729660209,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}