{"id":"W2043503013","doi":"10.1186/1471-2164-10-441","title":"Reciprocal regulation by the CepIR and CciIR quorum sensing systems in Burkholderia cenocepacia","year":2009,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of Calgary","funders":"University of North Carolina at Chapel Hill; Fondation pour la Recherche Médicale; Cardiff University; Cystic Fibrosis Foundation Therapeutics","keywords":"Burkholderia cenocepacia; Quorum sensing; Biology; Gene; Caulobacter crescentus; Genetics; DNA microarray; Microarray analysis techniques; Regulation of gene expression; Microarray; Gene expression profiling; Virulence; Mutant; Gene regulatory network; Gene cluster; Gene expression; Cell cycle","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002213571,0.0001340916,0.0001325614,0.00002203341,0.0001005012,0.00008006705,0.00006487001,0.0001687353,0.00000103327],"category_scores_gemma":[0.00002794389,0.0001115787,0.00003269321,0.000056417,0.00004454262,0.000004338302,0.00004077564,0.00007268466,0.000002193324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002790435,"about_ca_system_score_gemma":0.00003927201,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008517848,"about_ca_topic_score_gemma":0.0001211989,"domain_scores_codex":[0.9991468,0.00007198063,0.0002167207,0.0002730893,0.00005540517,0.0002359961],"domain_scores_gemma":[0.9996011,0.00001071642,0.00008087121,0.0002320066,0.00002762286,0.0000477069],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006344166,0.000009543754,0.0002983416,0.000005988056,0.000004443839,6.021288e-7,0.00006575602,0.00007568347,0.9932095,0.00006394583,0.0008814381,0.005321254],"study_design_scores_gemma":[0.001752999,0.0004321565,0.03698298,0.00007105275,0.00003670996,0.0002080591,0.0009003652,0.005260294,0.8054278,0.0001919802,0.1479206,0.0008149695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975078,0.001014247,0.0003944725,0.0003299868,0.0002234232,0.000211528,0.00001091805,0.000009513014,0.0002981299],"genre_scores_gemma":[0.9981299,0.00009720887,0.00097613,0.0002253489,0.0002924435,7.494498e-7,0.00008139132,0.00001488566,0.0001819485],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1877817,"threshold_uncertainty_score":0.4550046,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01159187157175295,"score_gpt":0.2185281713066048,"score_spread":0.2069362997348519,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}