{"id":"W2043533376","doi":"10.1097/mib.0000000000000023","title":"Decline in Presumptively Protective Gut Bacterial Species and Metabolites Are Paradoxically Associated with Disease Improvement in Pediatric Crohn’s Disease During Enteral Nutrition","year":2014,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":232,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Hospital for Sick Children","keywords":"Faecalibacterium prausnitzii; Feces; Bacteroides; Prevotella; Gut flora; Eubacterium; Crohn's disease; Gastroenterology; Parenteral nutrition; Internal medicine; Roseburia; Physiology; Medicine; Bifidobacterium; Disease; Biology; Lactobacillus; Immunology; Microbiology; Food science; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001214529,0.000266073,0.0002445924,0.0001392128,0.00009216619,0.00006814837,0.000124078,0.00008040747,0.00001330458],"category_scores_gemma":[0.0003050678,0.0002434607,0.00007261263,0.00008653641,0.000100412,0.00002931988,0.0001396757,0.0001126917,0.000001763288],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006491679,"about_ca_system_score_gemma":0.000162402,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001395915,"about_ca_topic_score_gemma":0.0004305431,"domain_scores_codex":[0.9983822,0.0001885343,0.0003607759,0.0005209401,0.0001626804,0.0003849348],"domain_scores_gemma":[0.9991116,0.00002593835,0.000190235,0.0002227282,0.00007696659,0.0003725166],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004422881,0.000717139,0.9451256,0.0005256884,0.00002858063,0.0001237201,0.00004622093,0.00003292753,0.04883443,0.00002320753,0.00003637723,0.00008327165],"study_design_scores_gemma":[0.003639662,0.0001150469,0.9946167,0.0001833547,0.00006587692,5.999227e-7,0.0000291695,0.00003474883,0.0007191711,0.0001247573,0.0001732751,0.0002976655],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973498,0.0009246911,0.00001310806,0.0001467126,0.00005605366,0.001036942,0.0004425745,0.00002357367,0.000006546188],"genre_scores_gemma":[0.9983515,0.0004113847,0.00002029781,0.0001156768,0.0003604066,0.0003770572,0.0002908848,0.00002737681,0.0000453982],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04949111,"threshold_uncertainty_score":0.9928038,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00557756531712252,"score_gpt":0.2133651713058953,"score_spread":0.2077876059887727,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}