{"id":"W2043533376","doi":"10.1097/mib.0000000000000023","title":"Decline in Presumptively Protective Gut Bacterial Species and Metabolites Are Paradoxically Associated with Disease Improvement in Pediatric Crohn’s Disease During Enteral Nutrition","year":2014,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":232,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Hospital for Sick Children","keywords":"Faecalibacterium prausnitzii; Feces; Bacteroides; Prevotella; Gut flora; Eubacterium; Crohn's disease; Gastroenterology; Parenteral nutrition; Internal medicine; Roseburia; Physiology; Medicine; Bifidobacterium; Disease; Biology; Lactobacillus; Immunology; Microbiology; Food science; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002832559,0.0002539759,0.0003981226,0.0004412872,0.0001864295,0.0003609403,0.0001460605,0.0002804309,0.0006061355],"category_scores_gemma":[0.001222012,0.0001299625,0.0001908384,0.0004535647,0.0002461418,0.0002498564,0.0002540483,0.0004412271,0.00009357594],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002437359,"about_ca_system_score_gemma":0.0001581187,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006803553,"about_ca_topic_score_gemma":0.0008948279,"domain_scores_codex":[0.999783,0.00003614935,0.00002262861,0.00005386319,0.00005402051,0.00005035112],"domain_scores_gemma":[0.9988613,0.0001603325,0.0006109978,0.00004238836,0.0001198322,0.0002052397],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001396586,0.00008546281,0.9736584,0.00005986944,0.00004292425,0.0006060388,0.0002095332,0.00007566265,0.01508889,0.00001275812,0.0000769578,0.008686903],"study_design_scores_gemma":[0.000003363626,0.0002949751,0.997817,0.000003622398,0.00001710564,0.0005926682,0.00008000833,0.0000426819,0.001026544,0.000006114042,0.0001143222,0.000001524266],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991024,0.0005884857,0.00007392577,0.00001275347,0.000002527937,0.000003280313,0.00006725513,0.000005077194,0.0001445074],"genre_scores_gemma":[0.9994767,0.0001673409,0.0001395195,0.00000950758,0.000003961323,0.000003792816,0.0001327358,0.000001564389,0.00006496886],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006803553,"threshold_uncertainty_score":0.00202775,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00557756531712252,"score_gpt":0.2133651713058953,"score_spread":0.2077876059887727,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}