{"id":"W2043615579","doi":"10.1016/j.micres.2007.03.005","title":"Mycobacterium avium subspecies paratuberculosis diagnosis and geno-typing: Genomic insights","year":2007,"lang":"en","type":"review","venue":"Microbiological Research","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Mycobacterium avium subspecies paratuberculosis; Paratuberculosis; Biology; Typing; Whole genome sequencing; Fastidious organism; Genetics; Genomics; Multilocus sequence typing; Mycobacterium; Genome; Comparative genomics; Subspecies; Microbiology; Virology; Genotype; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001523308,0.001076498,0.002783621,0.002727815,0.0002341629,0.00131289,0.001472724,0.002020737,0.002351598],"category_scores_gemma":[0.002555537,0.000432963,0.0006359624,0.003199857,0.0008602746,0.00196353,0.0007725912,0.002206112,0.002125312],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007763655,"about_ca_system_score_gemma":0.001634695,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001321401,"about_ca_topic_score_gemma":0.002060493,"domain_scores_codex":[0.9995489,0.0001013877,0.00005199971,0.0000926744,0.000167458,0.00003774072],"domain_scores_gemma":[0.9979609,0.001193899,0.0002154818,0.0000631361,0.0004628637,0.0001037264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009346409,0.00006444746,0.0004943975,0.009307717,0.0001079133,0.0003811721,0.00003933445,0.0002527389,0.001949013,0.001477738,0.03084422,0.9549878],"study_design_scores_gemma":[0.00003858261,0.0001183358,0.002379582,0.00456657,0.0002824573,0.003922999,0.0001443738,0.0001643945,0.001380504,0.002306063,0.9846593,0.0000368332],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00007278389,0.9987298,0.0001939571,0.0004837594,0.0001707324,0.000002563765,0.00001289715,0.000005145078,0.0003284322],"genre_scores_gemma":[0.0005396001,0.9981235,0.0003715868,0.0004458821,0.0002748644,0.000004524294,0.00003405004,0.000001330433,0.0002045888],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002783621,"threshold_uncertainty_score":0.008056104,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.3070884127751193,"score_gpt":0.46544147508237,"score_spread":0.1583530623072507,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}