{"id":"W2043748764","doi":"10.1186/gb-2012-13-3-r24","title":"The Transcription Factor Encyclopedia","year":2012,"lang":"en","type":"article","venue":"Genome biology","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; McMaster University; Queen's University; Fraser Health; Provincial Health Services Authority; Institute for Research in Immunology and Cancer; Child and Family Research Institute; BC Cancer Agency; University of Toronto; Western University; Université de Montréal; University of British Columbia","funders":"National Institute of Environmental Health Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Eye Institute; National Human Genome Research Institute; National Institute of Mental Health; National Health and Medical Research Council; British Heart Foundation; Ministerio de Economía y Competitividad; Natural Sciences and Engineering Research Council of Canada; Leukaemia and Lymphoma Research; Fakultet Medicinskih Nauka, Univerziteta U Kragujevcu; Institut Universitaire de France; Université de Montréal; Centre National de la Recherche Scientifique; Flight Attendant Medical Research Institute; Simon Fraser University; Ministero dell’Istruzione, dell’Università e della Ricerca; ZonMw; National Cancer Institute; University Hospitals Coventry and Warwickshire NHS Trust; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Agence Nationale de la Recherche; New York State Stem Cell Science; Deutsche Forschungsgemeinschaft; Université Paris Diderot; Ministerio de Ciencia e Innovación; Alexander and Margaret Stewart Trust; Action Medical Research; European Commission; European Foundation for the Study of Diabetes; Heart and Stroke Foundation of Canada; Newcastle University; Fondation pour la Recherche Médicale; National Institute of Neurological Disorders and Stroke; Leukemia and Lymphoma Society; Genome British Columbia; National Heart, Lung, and Blood Institute; Biotechnology and Biological Sciences Research Council; Cancer Research UK; Wellcome Trust; Institut National de la Santé et de la Recherche Médicale; Child and Family Research Institute; Medical Research Council; Diana Helis Henry Medical Research Foundation; Eunice Kennedy Shriver National Institute of Child Health and Human Development; GlaxoSmithKline; Cancer Research Society; Canadian Institutes of Health Research; Breast Cancer Campaign; U.S. Public Health Service; Associazione Italiana per la Ricerca sul Cancro; Genome Canada; University of British Columbia; Michael Smith Health Research BC; National Institutes of Health; Faculty of Medical Sciences, Newcastle University; Leukemia and Lymphoma Society of Canada; National Science Foundation","keywords":"Biology; Encyclopedia; Genome Biology; Human genetics; Computational biology; Evolutionary biology; Transcription factor; Genetics; Computational genomics; Genomics; Genome; Library science; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008042066,0.002278704,0.001401968,0.009941318,0.0008134654,0.003903377,0.001307091,0.0008895679,0.09861399],"category_scores_gemma":[0.003382359,0.000465921,0.0006012044,0.01226287,0.0005275259,0.002307265,0.001577423,0.001415464,0.09443232],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009682383,"about_ca_system_score_gemma":0.002702625,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003942271,"about_ca_topic_score_gemma":0.00483756,"domain_scores_codex":[0.9990065,0.0001225657,0.0002008494,0.0002485117,0.0003348773,0.0000866649],"domain_scores_gemma":[0.9984655,0.0005005907,0.0001768886,0.0001935112,0.0004754292,0.0001881112],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001682629,0.00003413937,0.0005821145,0.005214074,0.00006104788,0.0001784507,0.0001908257,0.0003184091,0.00701134,0.005959977,0.6646966,0.3155847],"study_design_scores_gemma":[0.000004878038,0.000007926797,0.0005349015,0.000304541,0.00001234991,0.0001881066,0.0000312322,0.00004713646,0.0006068258,0.0008090312,0.9974406,0.00001246639],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.00416685,0.2142415,0.03824406,0.0042737,0.007804165,0.0004927896,0.5033705,0.02663626,0.2007701],"genre_scores_gemma":[0.01342346,0.1772354,0.05123606,0.004200975,0.002257873,0.001147522,0.5769961,0.006543105,0.1669596],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.09861399,"threshold_uncertainty_score":0.3298967,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008572019895068093,"score_gpt":0.2255841287272206,"score_spread":0.2170121088321525,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}