{"id":"W2043782947","doi":"10.1007/s10482-013-9920-6","title":"Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov.","year":2013,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Clade; Phylogenetic tree; Monophyly; Evolutionary biology; Phylogenomics; Phylogenetics; Flagellum; Candidatus; 16S ribosomal RNA; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006417845,0.0002738485,0.0002371516,0.000915472,0.0004437941,0.0008616175,0.0003135309,0.0006940309,0.000904402],"category_scores_gemma":[0.001410456,0.0001852839,0.0002550533,0.0007436289,0.0004993734,0.0009248767,0.0004698291,0.001234198,0.0003561314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005099669,"about_ca_system_score_gemma":0.0004893001,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002380426,"about_ca_topic_score_gemma":0.002778821,"domain_scores_codex":[0.9998252,0.00003982472,0.0000119184,0.00004598578,0.00003735033,0.00003983455],"domain_scores_gemma":[0.9996013,0.000111404,0.0000808235,0.00004702184,0.00009603723,0.00006339833],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008789085,0.0001278726,0.07697803,0.0003925451,0.0001468705,0.0004654296,0.001112251,0.001583451,0.7278654,0.01454821,0.001378268,0.1745227],"study_design_scores_gemma":[0.0001033857,0.0006589064,0.7826891,0.0003683286,0.0003320661,0.002153476,0.002531987,0.01200875,0.09661026,0.02428327,0.07815385,0.000106634],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9261941,0.02791967,0.02787111,0.004789309,0.0001467416,0.00007328837,0.001440094,0.0001608276,0.01140479],"genre_scores_gemma":[0.9514343,0.01056134,0.03326298,0.0007804427,0.00008618704,0.00003942244,0.001587506,0.00004084698,0.002206949],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002380426,"threshold_uncertainty_score":0.004733145,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007130334025078215,"score_gpt":0.2298285035019097,"score_spread":0.2226981694768315,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}