{"id":"W2043889743","doi":"10.1016/j.bbagrm.2014.05.013","title":"Common themes and differences in SAM recognition among SAM riboswitches","year":2014,"lang":"en","type":"review","venue":"Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Francis Crick Institute","keywords":"Riboswitch; Computational biology; Biology; RNA; Genetics; Non-coding RNA; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006484635,0.0005861729,0.001035383,0.0009935398,0.0002258292,0.0009249767,0.0008478824,0.0007108059,0.001307861],"category_scores_gemma":[0.0005961659,0.00032134,0.0002835601,0.001455531,0.0007085928,0.00118894,0.0007244505,0.001498287,0.0007011166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005318018,"about_ca_system_score_gemma":0.00057765,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004192503,"about_ca_topic_score_gemma":0.0008229034,"domain_scores_codex":[0.9998268,0.00002413464,0.00002077962,0.00005677007,0.00004335821,0.00002813339],"domain_scores_gemma":[0.9998068,0.000119055,0.00002770264,0.000007496405,0.00002742167,0.00001155139],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001252666,0.00004584036,0.0003144035,0.01308241,0.00008111374,0.0003062213,0.0001601529,0.0007579716,0.02798288,0.01399229,0.006071533,0.9370799],"study_design_scores_gemma":[0.00002289718,0.0001994536,0.001437969,0.001756837,0.0001381763,0.001404995,0.0001528051,0.0004093642,0.0258433,0.008181649,0.9604021,0.00005041553],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001004451,0.9958538,0.001091138,0.0002134689,0.0001545773,0.00000637948,0.00002435845,0.00001789396,0.001633916],"genre_scores_gemma":[0.007268396,0.9894235,0.001268895,0.0003109025,0.0002067422,0.00002066197,0.00007295201,0.000007181685,0.001420819],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001307861,"threshold_uncertainty_score":0.004375279,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03263384095957031,"score_gpt":0.2711231025372467,"score_spread":0.2384892615776764,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}