{"id":"W2043925105","doi":"10.1371/journal.pone.0092153","title":"Low 2012–13 Influenza Vaccine Effectiveness Associated with Mutation in the Egg-Adapted H3N2 Vaccine Strain Not Antigenic Drift in Circulating Viruses","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":422,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Provincial Laboratory of Public Health; University of Calgary; University of Manitoba; Institut National de Santé Publique du Québec; Hospital for Sick Children; Université de Montréal; Manitoba Health; Université Laval; Public Health Ontario; BC Centre for Disease Control; University of British Columbia","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research; Sanofi Pasteur; British Columbia Centre for Disease Control; Sanofi; GlaxoSmithKline; Pfizer","keywords":"Virology; Antigenic drift; Biology; Context (archaeology); Influenza vaccine; Antigen; Strain (injury); Virus; Genotype; Influenza A virus; Microbiology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002656571,0.0003333442,0.0008423361,0.0004672417,0.0001638227,0.00004667815,0.0002197407,0.0001626064,0.00005704933],"category_scores_gemma":[0.004897283,0.0002370367,0.00006594113,0.001237038,0.00005568359,0.0003037691,0.0000759565,0.0007610441,0.00004793725],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002837307,"about_ca_system_score_gemma":0.000119228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004831293,"about_ca_topic_score_gemma":0.002669078,"domain_scores_codex":[0.9962531,0.0009385745,0.0005964878,0.0004628996,0.001068573,0.0006803273],"domain_scores_gemma":[0.9969758,0.001835846,0.0002278933,0.0004542848,0.0004106213,0.00009551794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002304946,0.003262944,0.7840905,0.0007749194,0.0009668818,0.0001930152,0.0032029,0.000830209,0.2023802,0.00009937587,0.00002618974,0.001867934],"study_design_scores_gemma":[0.01000956,0.0007101837,0.9610511,0.00224671,0.0001835208,0.000005855892,0.0003241529,0.004084157,0.0210325,0.00006942354,0.00001357464,0.0002692403],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970044,0.0002603217,0.00007520893,0.0003892411,0.00001679511,0.001822938,0.00002368779,0.00009805492,0.0003093671],"genre_scores_gemma":[0.998049,0.00002229229,0.0001521286,0.001327133,0.0001020044,0.0002290772,0.00004462952,0.00005701137,0.0000166789],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1813477,"threshold_uncertainty_score":0.9666077,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09505752428065914,"score_gpt":0.3350895602222164,"score_spread":0.2400320359415573,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}