{"id":"W2043991288","doi":"10.1021/pr200596r","title":"Comprehensive Proteomic Study Identifies Serpin and Cystatin Antiproteases as Novel Correlates of HIV-1 Resistance in the Cervicovaginal Mucosa of Female Sex Workers","year":2011,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Serpin; Immunology; Bacterial vaginosis; Cystatin; Cytokine; Biology; Proteome; Medicine; Cystatin C; Internal medicine; Bioinformatics; Microbiology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002903757,0.0001611514,0.0005055356,0.0005937695,0.0001674368,0.00002658997,0.0005429314,0.0001059014,0.0001775533],"category_scores_gemma":[0.0004001948,0.0001031175,0.0000872842,0.0005298925,0.0008010363,0.0001702349,0.0001730492,0.0009723627,0.00005137897],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005399253,"about_ca_system_score_gemma":0.0003623044,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008726357,"about_ca_topic_score_gemma":0.0001250851,"domain_scores_codex":[0.9966787,0.00149995,0.0007322785,0.0002296227,0.000399697,0.0004598268],"domain_scores_gemma":[0.9979345,0.0005506951,0.000393579,0.0003169152,0.0007539093,0.0000503978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.005986095,0.002889044,0.6598076,0.0004699823,0.0006188264,0.000334448,0.02089586,0.000002603209,0.3081107,0.00009133943,0.0003794244,0.0004139862],"study_design_scores_gemma":[0.005729659,0.004488524,0.8401631,0.0006138466,0.00003874644,0.0002356587,0.03795497,0.000001135,0.1097577,0.0007351396,0.0001579756,0.0001235493],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940557,0.002948181,0.00003196755,0.000195836,0.00003735003,0.002379991,0.00005337395,0.000003301505,0.0002942515],"genre_scores_gemma":[0.9984035,0.0001459299,0.0006837389,0.00000323977,0.00001258047,0.0001157656,0.000005185691,0.00001260537,0.0006173864],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.198353,"threshold_uncertainty_score":0.4224486,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08599099377797546,"score_gpt":0.3532731114745662,"score_spread":0.2672821176965908,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}