{"id":"W2044705396","doi":"10.1371/journal.pone.0022011","title":"Subdominant/Cryptic CD8 T Cell Epitopes Contribute to Resistance against Experimental Infection with a Human Protozoan Parasite","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo; Conselho Nacional de Desenvolvimento Científico e Tecnológico; University of Ottawa; Emory University","keywords":"Epitope; Immunodominance; Biology; Subdominant; Virology; Immune system; Antigen; CD8; Cytotoxic T cell; T cell; Intracellular parasite; Immunology; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003634958,0.00015246,0.0002814675,0.0001304252,0.0002066911,0.00002984288,0.00009877759,0.00005071054,0.0002142126],"category_scores_gemma":[0.00006381973,0.0001260554,0.00004364332,0.0002772134,0.00009770701,0.0001255454,0.00004223816,0.0001738158,0.0002616547],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000150425,"about_ca_system_score_gemma":0.00006503062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009412397,"about_ca_topic_score_gemma":0.000166886,"domain_scores_codex":[0.9986497,0.00004451991,0.0002147917,0.0003090421,0.0003919226,0.0003900192],"domain_scores_gemma":[0.9989266,0.00001994938,0.00006766543,0.0004432811,0.0002047525,0.0003377232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007268121,0.003164254,0.02324275,0.000133649,0.0001013671,0.00002881028,0.0005280121,6.794566e-8,0.9711303,0.0003732676,0.0005099469,0.00006080506],"study_design_scores_gemma":[0.001611027,0.001363187,0.233868,0.0002905883,0.00005463457,0.000002851857,0.00007312662,0.000003538516,0.7612493,0.00002740376,0.001310995,0.0001453213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9732527,0.0001334218,0.00008759903,0.0003493987,0.000008761403,0.002781334,0.00001999225,0.00009913361,0.02326773],"genre_scores_gemma":[0.9907854,0.00002719595,0.003318469,0.000189308,0.0001050702,0.001368009,0.00003451355,0.00003027714,0.004141734],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2106252,"threshold_uncertainty_score":0.5140391,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06906466357766726,"score_gpt":0.2923995940584902,"score_spread":0.2233349304808229,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}