{"id":"W2044770840","doi":"10.1371/journal.pone.0040541","title":"A Trans-Amazonian Screening of mtDNA Reveals Deep Intraspecific Divergence in Forest Birds and Suggests a Vast Underestimation of Species Diversity","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum","funders":"Natural Sciences and Engineering Research Council of Canada; Centre National de la Recherche Scientifique; Ontario Genomics Institute; Ontario Genomics; Genome Canada; National Aeronautics and Space Administration; National Science Foundation","keywords":"Intraspecific competition; Biology; Genetic divergence; Ecology; Evolutionary biology; Genetic variation; Genetic diversity; Allopatric speciation; Zoology; Population; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001128738,0.00007756319,0.0001486041,0.0000615096,0.00005559929,0.000004445107,0.00009345062,0.00008845703,0.0000440507],"category_scores_gemma":[0.00003495578,0.00008386655,0.00002918727,0.00009727749,0.00008791471,0.00001006424,0.0001274719,0.00004689125,5.03679e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005701516,"about_ca_system_score_gemma":0.000007382796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005213195,"about_ca_topic_score_gemma":0.0002360093,"domain_scores_codex":[0.9994013,0.00003641607,0.0001517283,0.0001221318,0.0001577299,0.0001306916],"domain_scores_gemma":[0.9996639,0.00001277678,0.00008896124,0.0001212779,0.00005842411,0.00005460811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000405371,0.0001142196,0.824212,0.00009085793,0.00004466623,2.651973e-7,0.0008031062,0.00008495481,0.1741678,0.0001146569,0.000008107208,0.000318828],"study_design_scores_gemma":[0.0003246791,0.00007189234,0.9545227,0.00005725754,0.00004700535,7.573236e-7,0.000271535,0.00006877004,0.04440467,0.0001341164,0.00001448674,0.00008213738],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962581,0.0003351471,0.003055772,0.00004104048,0.0000192855,0.0001197251,0.00003528017,0.000003306104,0.0001323003],"genre_scores_gemma":[0.9951846,0.0001676947,0.004514114,0.00001115431,0.00003542598,8.663957e-7,0.00003901533,0.000004427122,0.00004270495],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1303107,"threshold_uncertainty_score":0.3419979,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04970241482974661,"score_gpt":0.2266273880302472,"score_spread":0.1769249732005005,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}