{"id":"W2044927713","doi":"10.1093/nar/gkn898","title":"Small non-coding RNAs in Streptomyces coelicolor","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"National Institute of General Medical Sciences; National Institutes of Health; Grantová Agentura České Republiky; McMaster University; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Streptomyces coelicolor; Computational biology; Genetics; Streptomyces; Streptomycetaceae; Base sequence; RNA; Evolutionary biology; Actinomycetales; DNA; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009825707,0.0001368608,0.0003040981,0.0004290597,0.0002311386,0.000028906,0.0002490945,0.0001702714,0.000864038],"category_scores_gemma":[0.0007379756,0.0001030874,0.00007346374,0.0008472634,0.0003010705,0.00008299356,0.0001715169,0.0008575406,0.0004308281],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001673706,"about_ca_system_score_gemma":0.0001952273,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003520212,"about_ca_topic_score_gemma":0.00006238536,"domain_scores_codex":[0.9980332,0.0001101376,0.000265707,0.0004360369,0.0005142674,0.0006406683],"domain_scores_gemma":[0.9989777,0.00016428,0.00003024053,0.0003844607,0.0002632221,0.0001800958],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004861956,0.0003387255,0.02781342,0.0001628044,0.00003582382,0.0006771765,0.0008590411,6.193641e-7,0.9106067,0.0001102374,0.02232624,0.03658297],"study_design_scores_gemma":[0.002155396,0.0007707761,0.207577,0.0003906905,0.00001514462,0.0003050903,0.0006045252,0.0003549887,0.6901556,0.00008279538,0.09725916,0.0003288079],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9822645,0.0002384386,0.000005925226,0.004543659,0.0000784738,0.0005187959,0.000004456918,0.00004208257,0.01230368],"genre_scores_gemma":[0.9928675,0.00057965,0.000940001,0.0002292965,0.0003540825,0.000004066529,0.000006875497,0.00002694586,0.004991532],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2204511,"threshold_uncertainty_score":0.946061,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1076710614770625,"score_gpt":0.3452469380827433,"score_spread":0.2375758766056809,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}