{"id":"W2045056177","doi":"10.1371/journal.pone.0028543","title":"DNA Barcode Detects High Genetic Structure within Neotropical Bird Species","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"Natural Sciences and Engineering Research Council of Canada; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Genome Canada; Ontario Genomics; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo; Ontario Genomics Institute","keywords":"Biology; DNA barcoding; Monophyly; Subspecies; Species complex; Phylogeography; Genetic divergence; Endemism; Ecology; Clade; Phylogenetic tree; Taxon; Evolutionary biology; Zoology; Population; Genetic diversity","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00001588713,0.000162757,0.0001620143,0.00004017086,0.0000937212,0.00002041675,0.0002380461,0.0002090237,0.0006995538],"category_scores_gemma":[0.00004117117,0.0001555571,0.00005256599,0.00007427202,0.00009227909,0.000003236635,0.0001243263,0.0001174497,0.00004434492],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007590849,"about_ca_system_score_gemma":0.00003116138,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003533017,"about_ca_topic_score_gemma":0.0001419146,"domain_scores_codex":[0.9990375,0.00004560858,0.0001645729,0.0003155512,0.000220251,0.0002164831],"domain_scores_gemma":[0.9993771,0.000003663649,0.00007174657,0.0003524632,0.00007865907,0.0001163694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009014744,0.000110315,0.03879646,0.00003247366,0.0001696528,0.000008348638,0.0002398682,0.00003632145,0.9597979,0.0002755023,0.0002127037,0.0002303637],"study_design_scores_gemma":[0.0003549467,0.0002104644,0.330961,0.00001237682,0.00008169506,0.000006583095,0.00004216544,0.00001784443,0.666814,0.0009087414,0.0003926934,0.0001975965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987097,0.0001321146,0.0002555211,0.00004722942,0.0001163933,0.0001428467,0.00004777724,0.00003593533,0.0005125021],"genre_scores_gemma":[0.9762738,0.0000333934,0.022229,0.0002600038,0.0002919174,0.000002825537,0.00004269826,0.00002522995,0.0008411702],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2929839,"threshold_uncertainty_score":0.7659623,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03568269543189125,"score_gpt":0.1878172859950074,"score_spread":0.1521345905631162,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}