{"id":"W2045515923","doi":"10.1371/journal.pone.0101475","title":"Influence of HLA Class I Haplotypes on HIV-1 Seroconversion and Disease Progression in Pumwani Sex Worker Cohort","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Canadian Institutes of Health Research; National Institutes of Health; Bill and Melinda Gates Foundation","keywords":"Haplotype; Seroconversion; Cohort; Internal medicine; False discovery rate; Human leukocyte antigen; Medicine; Immunology; Biology; Human immunodeficiency virus (HIV); Genetics; Allele; Antigen; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004925557,0.0001979747,0.0002245694,0.0004407531,0.0005466572,0.0003973108,0.0002259371,0.0002379071,0.00154697],"category_scores_gemma":[0.001474591,0.0001866861,0.0002835442,0.0003837349,0.0001972275,0.0002472225,0.0003501597,0.0004630803,0.0001522974],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001200715,"about_ca_system_score_gemma":0.0001894748,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004474476,"about_ca_topic_score_gemma":0.004965667,"domain_scores_codex":[0.9997451,0.00008181646,0.00001248374,0.00006486259,0.00003964828,0.00005599024],"domain_scores_gemma":[0.9994274,0.0001377489,0.0001562764,0.00008105318,0.00004848166,0.0001489365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002550641,0.00002312247,0.9967958,0.00000346419,0.00003215924,0.0001451011,0.0001309146,0.0000235863,0.0004394318,0.00001560986,0.00006699685,0.002068749],"study_design_scores_gemma":[0.00000577115,0.0001044902,0.9991699,0.000002727063,0.00002033583,0.0002508769,0.0001393002,0.0001258884,0.00004768125,0.00001560772,0.0001148851,0.000002403616],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997101,0.0000742524,0.00002081258,0.00001449524,0.000002225736,0.000001325677,0.00004211335,0.000001277514,0.0001331867],"genre_scores_gemma":[0.9997581,0.00003718452,0.00002056328,0.000007704689,0.000003471404,0.000001837854,0.0000592564,0.000001323442,0.0001106377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004474476,"threshold_uncertainty_score":0.008896828,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01385196966371041,"score_gpt":0.2379233788896456,"score_spread":0.2240714092259352,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}