{"id":"W2045615262","doi":"10.1101/gr.084798.108","title":"Targeted screening of <i>cis-</i> regulatory variation in human haplotypes","year":2008,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University; McGill University and Génome Québec Innovation Centre","funders":"Genome Canada","keywords":"Biology; Genetics; Haplotype; Gene; Human genome; Single-nucleotide polymorphism; Allele; Expression quantitative trait loci; Genome; Computational biology; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003928562,0.0002162354,0.000316366,0.0003857412,0.00009916937,0.0002207088,0.0001442281,0.0001563174,0.0008723281],"category_scores_gemma":[0.0005008483,0.0001140286,0.0002224938,0.0002838479,0.0001381053,0.00007827828,0.000234413,0.0002426117,0.0002500227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008641316,"about_ca_system_score_gemma":0.0001026007,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000375909,"about_ca_topic_score_gemma":0.0008775222,"domain_scores_codex":[0.999764,0.00005649032,0.00001430655,0.00009649412,0.00004413494,0.00002462855],"domain_scores_gemma":[0.9997484,0.000127325,0.00005263572,0.00003437933,0.00001831008,0.00001880403],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007604886,0.00001287614,0.007085046,0.00005210383,0.00003415359,0.00009208461,0.00003508382,0.0004511565,0.9838228,0.0001477114,0.00004115577,0.008149889],"study_design_scores_gemma":[0.00003000601,0.0005840348,0.1508284,0.00001658328,0.000209215,0.00127092,0.00006897884,0.00598721,0.8363676,0.0005032669,0.00411184,0.00002204025],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9595065,0.0008918447,0.03683475,0.00005407996,0.000006822484,0.00008590375,0.001567981,0.0001281908,0.0009238387],"genre_scores_gemma":[0.9710956,0.0005651273,0.0255587,0.00008796885,0.00001038438,0.00008571815,0.001876173,0.00004340307,0.0006768695],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008723281,"threshold_uncertainty_score":0.002918184,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03567392940894271,"score_gpt":0.3015331449639767,"score_spread":0.2658592155550339,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}