{"id":"W2045967422","doi":"10.1006/viro.2001.0876","title":"Human Immunodeficiency Virus Type 1 Clade A and D Neurotropism: Molecular Evolution, Recombination, and Coreceptor Use","year":2001,"lang":"en","type":"article","venue":"Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"Medical Research Council; Alberta Heritage Foundation for Medical Research; National Institute of Mental Health; Howard Hughes Medical Institute","keywords":"Biology; Clade; Phylogenetic tree; Virology; Nonsynonymous substitution; Virus; Phylogenetics; Genetics; Hypervariable region; Gene; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006682905,0.000311398,0.0002840547,0.0008073055,0.0004551061,0.0007959787,0.0005488118,0.0005603691,0.001088148],"category_scores_gemma":[0.0006327254,0.0001753748,0.0002609623,0.000503214,0.0004386557,0.0006037413,0.0003813491,0.0009440698,0.0002729802],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005725215,"about_ca_system_score_gemma":0.000282218,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001211862,"about_ca_topic_score_gemma":0.001017725,"domain_scores_codex":[0.9997497,0.00007263718,0.00001606624,0.00005477674,0.00003741859,0.00006933627],"domain_scores_gemma":[0.9995642,0.0001459452,0.0001064987,0.00004478613,0.00005693715,0.00008148811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001217103,0.0002725862,0.06105919,0.000140609,0.00009489297,0.001048509,0.0006588668,0.001057437,0.8593978,0.005771283,0.0003668068,0.06891494],"study_design_scores_gemma":[0.000223579,0.002867895,0.7059535,0.0002437604,0.0004418548,0.02443156,0.002460261,0.01510345,0.1959475,0.006889055,0.04523307,0.00020459],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994271,0.002951242,0.0006047541,0.00007676282,0.000008934385,0.00001253101,0.00004993061,0.00000672739,0.00201808],"genre_scores_gemma":[0.9969308,0.001462011,0.0006573043,0.00008233754,0.00001539417,0.000007725846,0.0001423976,0.00001003099,0.0006920648],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001211862,"threshold_uncertainty_score":0.004153907,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01737159442436588,"score_gpt":0.2608890771805419,"score_spread":0.243517482756176,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}