{"id":"W2045978961","doi":"10.1007/s12155-009-9073-7","title":"Bacterial Communities in the Rhizosphere of Biofuel Crops Grown on Marginal Lands as Evaluated by 16S rRNA Gene Pyrosequences","year":2010,"lang":"en","type":"article","venue":"BioEnergy Research","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":59,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Great Lakes Bioenergy Research Center; Oulun Yliopisto; Office of Science; Université de Montréal; Université du Québec à Montréal; U.S. Department of Energy","keywords":"Rhizosphere; Acidobacteria; Biology; Actinobacteria; Gemmatimonadetes; Bacterial phyla; Proteobacteria; Community structure; Verrucomicrobia; Agronomy; Microbial population biology; Biofuel; Agroecosystem; Botany; Agriculture; Ecology; 16S ribosomal RNA; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002304418,0.0001203662,0.0001690963,0.00005804616,0.0003879029,0.00003420328,0.001319553,0.0001999482,0.02125307],"category_scores_gemma":[0.0001056726,0.00008318161,0.00003861844,0.0003770335,0.00193676,0.00007706243,0.000416313,0.0009622687,0.0002733342],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004211227,"about_ca_system_score_gemma":0.00005463853,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.03773684,"about_ca_topic_score_gemma":0.06260058,"domain_scores_codex":[0.9968842,0.001991524,0.000201607,0.0001632422,0.0003351182,0.0004243229],"domain_scores_gemma":[0.9986572,0.00061589,0.00005377008,0.000585957,0.00003374825,0.00005349353],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004586553,0.0003397478,0.01686095,0.000007021281,0.00001205135,0.000006315267,0.001064449,0.00004019486,0.9677483,0.000888404,0.01158739,0.0009864597],"study_design_scores_gemma":[0.003383866,0.005992539,0.310382,0.00006560449,0.00002001455,0.00008659414,0.005253719,0.0005120061,0.3418783,0.01833705,0.3132233,0.0008649764],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9847724,0.00003145105,3.14016e-7,0.0007276071,0.0001348102,0.0001346151,0.00003936866,0.000008435007,0.01415094],"genre_scores_gemma":[0.998717,0.0001159181,0.00003970522,0.0001812973,0.00005096997,0.00002221468,0.0002086192,0.000008749468,0.0006555245],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.62587,"threshold_uncertainty_score":0.9796416,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04885551755288245,"score_gpt":0.3384446479873373,"score_spread":0.2895891304344549,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}