{"id":"W2046144371","doi":"10.1186/1471-2164-11-729","title":"SPC-P1: a pathogenicity-associated prophage of Salmonella paratyphi C","year":2010,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Peking University Health Science Center; Specialized Research Fund for the Doctoral Program of Higher Education of China; Peking University; Canadian Institutes of Health Research; Natural Science Foundation of Heilongjiang Province; National Natural Science Foundation of China; Harbin Medical University","keywords":"Prophage; Biology; Pathogenicity island; Microbiology; Salmonella; Typhoid fever; Virulence; Virology; Bacteriophage; Lysogenic cycle; Temperateness; Pathogenicity; Bacteria; Genetics; Escherichia coli; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004860661,0.0001580874,0.0003196422,0.0000108344,0.00009257896,0.00001639414,0.0003355693,0.0002523271,0.0002502581],"category_scores_gemma":[0.000208324,0.00006607726,0.0001677591,0.0001863957,0.00009960478,0.0000349381,0.00009000099,0.0002119586,0.00007729045],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001796062,"about_ca_system_score_gemma":0.00002526411,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001852783,"about_ca_topic_score_gemma":0.002087265,"domain_scores_codex":[0.9987617,0.0001290054,0.0003702859,0.0003021021,0.0001008358,0.0003361024],"domain_scores_gemma":[0.9991772,0.000306059,0.0002298649,0.0001132726,0.00006460696,0.0001089609],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003429628,0.00009564935,0.1169644,0.000004034693,0.00001151166,0.000002479241,0.00004830286,0.000004886976,0.8791648,0.000237896,0.0002146217,0.003217092],"study_design_scores_gemma":[0.0002904882,0.0002673505,0.9454657,0.000005775764,0.00003345481,0.00001924229,0.0001366697,0.0002098353,0.04218221,0.002641334,0.008427652,0.0003202158],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998279,0.0001094825,0.000008112213,0.0001001817,0.0003036004,0.0002091372,0.00007789594,0.00004987874,0.0008627267],"genre_scores_gemma":[0.99872,0.00003255628,0.0005125199,0.0001551578,0.000241797,0.0000106341,0.00006838734,0.000001899927,0.000257016],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8369826,"threshold_uncertainty_score":0.2740151,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02673961902964398,"score_gpt":0.2273033291412523,"score_spread":0.2005637101116083,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}