{"id":"W2046144371","doi":"10.1186/1471-2164-11-729","title":"SPC-P1: a pathogenicity-associated prophage of Salmonella paratyphi C","year":2010,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Peking University Health Science Center; Specialized Research Fund for the Doctoral Program of Higher Education of China; Peking University; Canadian Institutes of Health Research; Natural Science Foundation of Heilongjiang Province; National Natural Science Foundation of China; Harbin Medical University","keywords":"Prophage; Biology; Pathogenicity island; Microbiology; Salmonella; Typhoid fever; Virulence; Virology; Bacteriophage; Lysogenic cycle; Temperateness; Pathogenicity; Bacteria; Genetics; Escherichia coli; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001013538,0.0005240458,0.0001859158,0.0004247945,0.0002040811,0.000181324,0.0002636993,0.0003981474,0.001020502],"category_scores_gemma":[0.0001790017,0.0001013696,0.0003036136,0.0003092436,0.0002713688,0.0001140218,0.0002325506,0.0007748223,0.000387813],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003126576,"about_ca_system_score_gemma":0.0003878237,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00128895,"about_ca_topic_score_gemma":0.0008555578,"domain_scores_codex":[0.9998579,0.00001226222,0.00001057269,0.00002728958,0.00005655023,0.00003546793],"domain_scores_gemma":[0.9997272,0.00004810073,0.00009165816,0.00002593214,0.00004060547,0.00006643461],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001773228,0.00004488972,0.001423869,0.00005566142,0.000005935298,0.0001698722,0.00001296673,0.00005514989,0.9967803,0.00003842618,0.00004230215,0.001193372],"study_design_scores_gemma":[0.00005439513,0.001477392,0.0795319,0.0000315464,0.00006257158,0.003414349,0.000154487,0.001734567,0.9108238,0.00008963845,0.002605014,0.00002028773],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979906,0.000208603,0.0009812618,0.00003309823,0.00001102139,0.00003484237,0.0003631384,0.00002331803,0.0003541539],"genre_scores_gemma":[0.9931723,0.0001922507,0.003568043,0.00006127118,0.00001402593,0.00005327985,0.001936661,0.00002903103,0.000973099],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00128895,"threshold_uncertainty_score":0.003413856,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02673961902964398,"score_gpt":0.2273033291412523,"score_spread":0.2005637101116083,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}