{"id":"W2046217126","doi":"10.1089/fpd.2008.0100","title":"Examination of Stress and Virulence Gene Expression in <i>Escherichia coli</i> O157:H7 Using Targeted Microarray Analysis","year":2008,"lang":"en","type":"article","venue":"Foodborne Pathogens and Disease","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada; Bell (Canada)","funders":"Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Ontario","keywords":"rpoS; Regulon; Virulence; Escherichia coli; Biology; Transcriptome; Gene; Microarray analysis techniques; Gene expression profiling; Microbiology; Sigma factor; Microarray; Gene expression; CLPB; Pathogenic Escherichia coli; Genetics; Promoter; RNA polymerase","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001212622,0.0003450573,0.0006490493,0.0002658338,0.0001540556,0.0003153266,0.0001660522,0.000308835,0.0005790195],"category_scores_gemma":[0.0001148314,0.0001401514,0.0003333986,0.0004438922,0.0001455271,0.0001370084,0.0001493912,0.0003104101,0.000247637],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002349005,"about_ca_system_score_gemma":0.0001540801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000491251,"about_ca_topic_score_gemma":0.0009537943,"domain_scores_codex":[0.9998236,0.0000181426,0.000009844403,0.00004954765,0.00004881019,0.0000499808],"domain_scores_gemma":[0.9999064,0.00001998891,0.00002254532,0.000005175958,0.0000309355,0.00001488649],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006678276,0.00001546516,0.0005355799,0.0000353614,0.00000530173,0.000009431618,0.00000951417,0.00005368107,0.9984646,0.000009119372,0.00003163585,0.0007635707],"study_design_scores_gemma":[0.00001136188,0.000722253,0.08600102,0.00001556281,0.00008072593,0.0001525893,0.0001760468,0.002379074,0.9083865,0.00007495964,0.001978485,0.00002151795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9917544,0.001105352,0.003649133,0.00009358906,0.00002335956,0.00004818374,0.002396974,0.00007391968,0.00085499],"genre_scores_gemma":[0.9721868,0.002263936,0.01343489,0.0004209171,0.00004081261,0.0003088457,0.008230957,0.00004870239,0.003064149],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006490493,"threshold_uncertainty_score":0.001937032,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01513890059557435,"score_gpt":0.2504753656390354,"score_spread":0.2353364650434611,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}