{"id":"W2046509071","doi":"10.1073/pnas.0711874105","title":"Epitope discovery in West Nile virus infection: Identification and immune recognition of viral epitopes","year":2008,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Epitope; Virology; Biology; CTL*; Human leukocyte antigen; Major histocompatibility complex; Immune system; Antigen; Cytotoxic T cell; Epitope mapping; NS3; Virus; Immunology; CD8; Hepatitis C virus; Genetics; In vitro","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005645737,0.00006065397,0.0001649002,0.0001606264,0.0000927027,0.00001102858,0.0001259248,0.00004939894,0.00001343688],"category_scores_gemma":[0.0003987583,0.00004311245,0.00006247499,0.0004177871,0.000530963,0.0006112836,0.0000439677,0.00008864508,8.205153e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002043442,"about_ca_system_score_gemma":0.00003714417,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001112946,"about_ca_topic_score_gemma":6.909519e-7,"domain_scores_codex":[0.998848,0.000006203261,0.0003747595,0.000161461,0.0005298778,0.00007974712],"domain_scores_gemma":[0.9993563,0.00005027332,0.0003577462,0.000008377866,0.0002053064,0.00002203926],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001314804,0.0001975484,0.1633649,0.0001694917,0.00001743722,2.764487e-8,0.0002004776,0.00001495464,0.8277373,0.003822425,0.0001099536,0.004233982],"study_design_scores_gemma":[0.0003463369,0.00006166571,0.757772,0.0001255825,0.00002006589,0.00001207963,0.00005927425,0.0002418984,0.2348097,0.006493794,0.00002113588,0.00003646906],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971727,0.0006057799,0.000001553369,0.001205785,0.00002192789,0.000206942,0.00001909802,0.000004563037,0.0007616647],"genre_scores_gemma":[0.9990702,0.0005945307,0.00007857881,0.00007919366,0.00006872567,0.00001563107,8.368542e-7,0.0000024632,0.00008985228],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5944071,"threshold_uncertainty_score":0.1956355,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03463370725566759,"score_gpt":0.2964229736896503,"score_spread":0.2617892664339827,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}