{"id":"W2046607014","doi":"10.1371/journal.pone.0030158","title":"Gene Properties and Chromatin State Influence the Accumulation of Transposable Elements in Genes","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency; University of British Columbia","funders":"BC Cancer Agency; Canadian Institutes of Health Research","keywords":"Transposable element; Chromatin; Gene; Genetics; Biology; DNA Transposable Elements; Genome; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001721405,0.0001425809,0.0002160446,0.0002766961,0.00008448807,0.0005384843,0.0001270209,0.0001999317,0.001141006],"category_scores_gemma":[0.001180339,0.0001078813,0.0002440321,0.0003070611,0.0001890835,0.0002712746,0.0001884978,0.0002269741,0.0002766992],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001532394,"about_ca_system_score_gemma":0.00007931445,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005960705,"about_ca_topic_score_gemma":0.0007703321,"domain_scores_codex":[0.999864,0.00002008872,0.000009215742,0.00006234852,0.00002338766,0.00002101552],"domain_scores_gemma":[0.9993782,0.0003627237,0.000100931,0.00003898835,0.00004809228,0.00007105098],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005775837,0.00007473451,0.2368307,0.0001896046,0.0002062561,0.0002109722,0.0001713391,0.007198206,0.7400007,0.0006523433,0.0002051024,0.01368267],"study_design_scores_gemma":[0.00002048455,0.0003654129,0.8642795,0.00002820558,0.0002072486,0.0005154493,0.0002626755,0.0400206,0.09124129,0.001294295,0.001713114,0.00005162925],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982792,0.0002509812,0.0009303005,0.00001083957,0.000002496546,0.000002430708,0.0001882087,0.00002646534,0.0003090813],"genre_scores_gemma":[0.9992508,0.00007963075,0.000205413,0.00000952674,0.000002613981,0.000002758688,0.0003050455,0.0000141219,0.0001301197],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001141006,"threshold_uncertainty_score":0.003817081,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.12034558759214,"score_gpt":0.2394339814002731,"score_spread":0.1190883938081331,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}