{"id":"W2046912879","doi":"10.1371/journal.pone.0088718","title":"Comprehensive Analysis of HPV16 Integration in OSCC Reveals No Significant Impact of Physical Status on Viral Oncogene and Virally Disrupted Human Gene Expression","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Head and Neck Cancer Studies","field":"Medicine","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"Occupational Cancer Research Centre","funders":"Universität zu Köln","keywords":"Biology; Viral Oncogene; Gene; Gene expression; Oncogene; Gene expression profiling; Reverse transcriptase; Virology; Virus; Real-time polymerase chain reaction; Reverse transcription polymerase chain reaction; RNA; Genetics; Cell cycle","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009790793,0.0001520955,0.00100936,0.0002753065,0.00003138465,0.000003879056,0.00004003228,0.00005100342,0.00002015966],"category_scores_gemma":[0.0001253062,0.000107629,0.0001367604,0.0003216357,0.0000915716,0.00004216119,0.00003338019,0.0001254592,0.000001833219],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008991576,"about_ca_system_score_gemma":0.00002765519,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003142667,"about_ca_topic_score_gemma":0.0000297748,"domain_scores_codex":[0.9987887,0.0001101607,0.0003570447,0.0002372195,0.0003236771,0.0001832286],"domain_scores_gemma":[0.9991308,0.0001473668,0.0001729451,0.0002349795,0.0002201751,0.00009375776],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006108378,0.001624953,0.04830881,0.0001234525,0.0007562795,0.000002862679,0.001107013,0.00002993348,0.9464795,0.00002075686,0.00001954971,0.0009160587],"study_design_scores_gemma":[0.001401339,0.004000965,0.4578573,0.0006585712,0.0008269944,1.184508e-7,0.00008157274,0.003221439,0.531817,0.00003486634,0.000001626616,0.00009822082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990764,0.00008431771,0.00003688105,0.00003149724,0.000006223487,0.0002828621,0.00006699086,0.00001220538,0.000402571],"genre_scores_gemma":[0.9991027,0.00009904844,0.0005390982,0.00004299937,0.0000614194,0.00001592103,0.00009091505,0.00001224678,0.00003571161],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4146625,"threshold_uncertainty_score":0.4388982,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04675834557689725,"score_gpt":0.3306680678899513,"score_spread":0.2839097223130541,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}