{"id":"W2047625810","doi":"10.1038/ismej.2008.115","title":"Gene transfer agent (GTA) genes reveal diverse and dynamic <i>Roseobacter</i> and <i>Rhodobacter</i> populations in the Chesapeake Bay","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Xiamen University; National Science Foundation","keywords":"Roseobacter; Biology; Rhodobacter; Horizontal gene transfer; Archaea; Genetics; Genetic diversity; Alphaproteobacteria; 16S ribosomal RNA; Phylogenetics; Gene; Population; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005592443,0.0001149403,0.0001342921,0.00002250874,0.0009421525,0.0000249384,0.0003117204,0.00006635137,0.0004592081],"category_scores_gemma":[0.000008573888,0.00006843601,0.00004228135,0.00009652795,0.0004289828,0.0001372851,0.0001289298,0.0004844525,0.00002571069],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003977661,"about_ca_system_score_gemma":0.000009508918,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001692833,"about_ca_topic_score_gemma":0.003371822,"domain_scores_codex":[0.9988342,0.0005428698,0.0001929566,0.0001156793,0.00009387221,0.0002204501],"domain_scores_gemma":[0.9996011,0.0001034937,0.00004447943,0.0001900348,0.0000046552,0.0000562612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002315069,0.0004150856,0.591419,0.00001367743,0.00007478076,0.0001486583,0.03110894,0.0009998592,0.355549,0.0001248526,0.00640927,0.01350535],"study_design_scores_gemma":[0.0003917263,0.00007347309,0.9929008,0.000004750899,0.00002412485,0.001506434,0.0002558504,0.00007073536,0.0001485507,0.0009026611,0.003618392,0.0001024666],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972152,0.0001633465,0.00005064441,0.002041334,0.000108874,0.0001274598,0.0000100656,0.000005362539,0.0002777849],"genre_scores_gemma":[0.9969561,0.001085213,0.0001643291,0.001592875,0.00004525806,0.000002915627,0.00000725539,0.000006384412,0.0001396776],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4014818,"threshold_uncertainty_score":0.724637,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03967222142156756,"score_gpt":0.2481225666842782,"score_spread":0.2084503452627106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}