{"id":"W2047625810","doi":"10.1038/ismej.2008.115","title":"Gene transfer agent (GTA) genes reveal diverse and dynamic <i>Roseobacter</i> and <i>Rhodobacter</i> populations in the Chesapeake Bay","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Xiamen University; National Science Foundation","keywords":"Roseobacter; Biology; Rhodobacter; Horizontal gene transfer; Archaea; Genetics; Genetic diversity; Alphaproteobacteria; 16S ribosomal RNA; Phylogenetics; Gene; Population; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001193271,0.0002543996,0.0001449901,0.0005339656,0.0001791342,0.0003957836,0.0001325391,0.0002562487,0.0005873633],"category_scores_gemma":[0.0002467026,0.0001709834,0.0002377903,0.0004148178,0.0001788476,0.000161434,0.0002208374,0.0002494748,0.0002080239],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002863079,"about_ca_system_score_gemma":0.0002112403,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01276671,"about_ca_topic_score_gemma":0.01467381,"domain_scores_codex":[0.9998647,0.00001106901,0.00001081705,0.0000626191,0.00002688744,0.00002386702],"domain_scores_gemma":[0.9998135,0.0000262057,0.00008154008,0.00001208763,0.00002792574,0.00003882419],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000247989,0.00003201563,0.1131205,0.00004964971,0.00002814542,0.0001601685,0.0005403049,0.0001476707,0.8792263,0.00003522088,0.00004670158,0.006365425],"study_design_scores_gemma":[0.000007460939,0.0001774992,0.9639409,0.00001232985,0.00003615816,0.0002751905,0.0004551749,0.0005997777,0.03382956,0.0000212405,0.0006370847,0.000007729936],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992273,0.0001257492,0.0002211196,0.00001619753,0.000001039201,0.000005088989,0.0002189294,0.000008158826,0.0001764021],"genre_scores_gemma":[0.9975421,0.0001071064,0.001106194,0.00004448521,0.000003125757,0.000008202915,0.0007283645,0.000004270134,0.0004561465],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01276671,"threshold_uncertainty_score":0.02538484,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03967222142156756,"score_gpt":0.2481225666842782,"score_spread":0.2084503452627106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}