{"id":"W2047751512","doi":"10.1186/1471-2148-10-94","title":"The Trichoderma harzianum demon: complex speciation history resulting in coexistence of hypothetical biological species, recent agamospecies and numerous relict lineages","year":2010,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":153,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Austrian Science Fund","keywords":"Biology; Phylogenetic tree; Trichoderma harzianum; Species complex; Evolutionary biology; Phylogenetics; Genetics; Biological pest control; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004607672,0.0001369032,0.0002194578,0.00002572984,0.0002742365,0.00001432497,0.0002753115,0.0002067726,0.0003203266],"category_scores_gemma":[0.0007710494,0.000054287,0.0000618,0.0001762412,0.000636638,0.00006970988,0.000132258,0.0004013671,0.00001189155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009839008,"about_ca_system_score_gemma":0.00002596331,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003300533,"about_ca_topic_score_gemma":0.00218076,"domain_scores_codex":[0.9985977,0.0003290635,0.0004465636,0.0002747601,0.00007847462,0.0002734379],"domain_scores_gemma":[0.9979614,0.001589201,0.0001985031,0.0001001371,0.0001000513,0.0000506785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002281107,0.0001763424,0.1319519,0.000003467266,0.000008399241,0.000002034194,0.00007240642,0.00000171995,0.8463387,0.004633984,0.005019003,0.01156389],"study_design_scores_gemma":[0.0001230133,0.0001369123,0.6711707,0.000007021181,0.000002457938,0.00005301581,0.0002209943,0.0002131104,0.0003107198,0.0003485662,0.3273247,0.00008882843],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938397,0.001509692,0.00001440032,0.001920415,0.0004424654,0.0001722001,0.00008521658,0.00002979472,0.001986099],"genre_scores_gemma":[0.9961188,0.001923745,0.0009869366,0.00009228245,0.0002411778,0.00001129434,0.0001723422,0.000001029663,0.0004524213],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.846028,"threshold_uncertainty_score":0.3507351,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08067127883081059,"score_gpt":0.2519254763444732,"score_spread":0.1712541975136626,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}