{"id":"W2047992209","doi":"10.1186/1471-2164-15-452","title":"Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Genome Alberta; Alberta Livestock and Meat Agency; Genome Canada","keywords":"Biology; Salmonella; Salmonella enterica; Gene; Gene expression; Transcriptome; Gene expression profiling; Genetics; Microbiology; Microarray; Serotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009435824,0.0001616295,0.0003882073,0.00003591024,0.0001486978,0.00004958165,0.0001965616,0.0001590348,0.00007906812],"category_scores_gemma":[0.000115448,0.0000684925,0.0001034629,0.000658197,0.00003178595,0.00006437186,0.00005077306,0.00008956942,0.0000137428],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006350195,"about_ca_system_score_gemma":0.000008184116,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002809333,"about_ca_topic_score_gemma":0.004244273,"domain_scores_codex":[0.9984354,0.0003571337,0.0003570198,0.0003803955,0.0001187517,0.000351279],"domain_scores_gemma":[0.9989743,0.0005646217,0.0002488802,0.0000946563,0.00004763812,0.00006988878],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004180846,0.00002949183,0.7186185,0.000001655494,0.00005021399,0.000001111572,0.00005518323,0.01647519,0.2639123,0.00002194112,0.00007796027,0.0007146668],"study_design_scores_gemma":[0.0001723766,0.00007341457,0.9887045,0.00001095085,0.00009957274,0.000001452088,0.00005134971,0.006188616,0.003705917,0.0004750682,0.0003314327,0.0001853365],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982364,0.0001925601,0.001038047,0.00008264634,0.00009087705,0.0001238362,0.000011736,0.00004577486,0.000178132],"genre_scores_gemma":[0.9982594,0.00007778405,0.0007250085,0.0001321907,0.0003518366,0.00001085834,0.000336615,0.000002042981,0.0001043154],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.270086,"threshold_uncertainty_score":0.2793043,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0231327728848364,"score_gpt":0.2348606969469566,"score_spread":0.2117279240621202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}