{"id":"W2047992209","doi":"10.1186/1471-2164-15-452","title":"Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Genome Alberta; Alberta Livestock and Meat Agency; Genome Canada","keywords":"Biology; Salmonella; Salmonella enterica; Gene; Gene expression; Transcriptome; Gene expression profiling; Genetics; Microbiology; Microarray; Serotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002588,0.0002340372,0.0003145993,0.0009368227,0.0001831228,0.0003519001,0.000141814,0.0002155923,0.0007914908],"category_scores_gemma":[0.0004389478,0.0001276244,0.0004553764,0.001157352,0.0001857953,0.0001716746,0.0002791228,0.0001914497,0.0001311612],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002588538,"about_ca_system_score_gemma":0.0002162997,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001314114,"about_ca_topic_score_gemma":0.00161057,"domain_scores_codex":[0.9998069,0.00002825975,0.000009409434,0.00009347546,0.0000249167,0.00003702359],"domain_scores_gemma":[0.9997308,0.0001084332,0.00007865849,0.00001409017,0.00003832255,0.00002965183],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00104558,0.0001625122,0.5570579,0.0005124562,0.0006280188,0.0003935855,0.0004803902,0.01744558,0.3820018,0.0004993214,0.001158123,0.03861476],"study_design_scores_gemma":[0.00001052229,0.0002011208,0.9273965,0.00002134963,0.0001582051,0.0002432107,0.0001948506,0.06088147,0.009204224,0.0005226412,0.001145287,0.00002081743],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923044,0.0003039835,0.004694437,0.00004358278,0.000006373526,0.00001663302,0.002122009,0.00004689262,0.0004616917],"genre_scores_gemma":[0.9909753,0.0001621292,0.003578324,0.00002852463,0.000006706037,0.00005442627,0.004735545,0.00001088211,0.0004480915],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001314114,"threshold_uncertainty_score":0.002647817,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0231327728848364,"score_gpt":0.2348606969469566,"score_spread":0.2117279240621202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}