{"id":"W2048705639","doi":"10.1074/jbc.m509157200","title":"Autophagy Controls Salmonella Infection in Response to Damage to the Salmonella-containing Vacuole","year":2006,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":648,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; Ministero dello Sviluppo Economico; Burroughs Wellcome Fund; University of Toronto; Hospital for Sick Children; Ontario Innovation Trust","keywords":"Salmonella enterica; Intracellular parasite; Biology; Vacuole; Autophagy; Microbiology; Salmonella; Type three secretion system; Intracellular; ATG5; Bacteria; Cell biology; Virulence; Cytoplasm; Biochemistry; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001356559,0.0002569339,0.000337842,0.0002008425,0.0002154452,0.000429524,0.0001228935,0.0003007402,0.000814277],"category_scores_gemma":[0.0001128994,0.0001592875,0.0003177013,0.00009016399,0.0002713618,0.0002277248,0.0003312319,0.0003535564,0.0005273369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004304561,"about_ca_system_score_gemma":0.0002075064,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005305288,"about_ca_topic_score_gemma":0.0007718704,"domain_scores_codex":[0.9998268,0.00002987077,0.00001809712,0.00004104572,0.00001990183,0.00006419569],"domain_scores_gemma":[0.9998596,0.00001394719,0.00004051178,0.00001091369,0.00002714448,0.00004790538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001492624,0.00001155258,0.0004523464,0.00003468601,0.00000306724,0.00005345239,0.00002950548,0.00002889693,0.9987395,0.00007282646,0.0000565769,0.0003683361],"study_design_scores_gemma":[0.0000390129,0.0005116391,0.07702954,0.00004544367,0.00003961816,0.000695513,0.0003987953,0.004013397,0.9120311,0.0003452426,0.004823277,0.0000275129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947819,0.002224433,0.001240959,0.000127447,0.00004890544,0.00001576695,0.0002755625,0.0001064183,0.001178611],"genre_scores_gemma":[0.9969031,0.0005578917,0.0006189194,0.00005886407,0.00001086214,0.00001735943,0.0002942415,0.00002257675,0.001516158],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000814277,"threshold_uncertainty_score":0.003123164,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01660375230691682,"score_gpt":0.2871616320399662,"score_spread":0.2705578797330494,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}