{"id":"W2049102021","doi":"10.1128/jvi.79.1.353-363.2005","title":"Human Immunodeficiency Virus Type 1 Genomic RNA Sequences in the Female Genital Tract and Blood: Compartmentalization and Intrapatient Recombination","year":2004,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"Montreal General Hospital","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Virology; Genome; RNA; Genital tract; Virus; Lentivirus; Viral evolution; Genetics; Compartmentalization (fire protection); Viral disease; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003158856,0.00007263417,0.000147664,0.0001266928,0.0001325016,0.00001486408,0.00008956598,0.00007216639,0.00004517446],"category_scores_gemma":[0.00001886962,0.00004764373,0.00002244488,0.0000674585,0.0001928132,0.00008664731,0.00001969093,0.0001911712,0.00001438253],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004251013,"about_ca_system_score_gemma":0.0000394314,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001063367,"about_ca_topic_score_gemma":0.00007877577,"domain_scores_codex":[0.9992774,0.0001980639,0.0002535057,0.00008831294,0.00003497369,0.0001477337],"domain_scores_gemma":[0.9997053,0.00004549309,0.0001442214,0.00005732337,0.0000340459,0.00001363642],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001753776,0.001150092,0.03239448,0.0000085799,0.0001252038,0.0001012975,0.003545492,0.00007802054,0.9586214,0.001344627,0.00003388059,0.002421581],"study_design_scores_gemma":[0.008974446,0.01077131,0.9400392,0.0000306548,0.0001396275,0.003899046,0.001517343,0.000004944229,0.02923093,0.004533724,0.0006910922,0.0001676345],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939716,0.005343803,0.000009589213,0.0003013305,0.0001352915,0.0001246842,0.000006017443,0.000002331317,0.0001053648],"genre_scores_gemma":[0.9992059,0.0006520197,0.00003349502,0.00006035186,0.000009115336,0.000002861946,0.00002081031,0.000003261046,0.00001220128],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9293904,"threshold_uncertainty_score":0.1942855,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02103219573963405,"score_gpt":0.283598376476004,"score_spread":0.2625661807363699,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}