{"id":"W2049102021","doi":"10.1128/jvi.79.1.353-363.2005","title":"Human Immunodeficiency Virus Type 1 Genomic RNA Sequences in the Female Genital Tract and Blood: Compartmentalization and Intrapatient Recombination","year":2004,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"Montreal General Hospital","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Virology; Genome; RNA; Genital tract; Virus; Lentivirus; Viral evolution; Genetics; Compartmentalization (fire protection); Viral disease; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001902384,0.0001060355,0.0001374165,0.0003129588,0.0001435396,0.0003894479,0.0001611921,0.0002390287,0.0004262499],"category_scores_gemma":[0.0006273533,0.0001343738,0.0001134872,0.0002711689,0.0001759575,0.0002546699,0.000177253,0.0001869215,0.0001189757],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001678701,"about_ca_system_score_gemma":0.00009370246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003863867,"about_ca_topic_score_gemma":0.0003770054,"domain_scores_codex":[0.9998181,0.00005467365,0.00001090506,0.00004962228,0.00003954358,0.00002713968],"domain_scores_gemma":[0.9997757,0.00008147908,0.00007120986,0.00002945749,0.0000237274,0.00001854022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002829999,0.00002738035,0.0332811,0.00005674104,0.00002192114,0.0002450193,0.000404837,0.0001704451,0.9525392,0.0001760408,0.00001815163,0.01277616],"study_design_scores_gemma":[0.00003003076,0.001133803,0.6759257,0.00005421076,0.0001201983,0.01024026,0.0008993092,0.003374187,0.3016383,0.0006706158,0.005880997,0.00003241021],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979754,0.001010406,0.0006926323,0.00001277485,0.000001245506,0.000004642191,0.00003903799,0.000004668491,0.0002592461],"genre_scores_gemma":[0.9975926,0.0003540954,0.0016308,0.0000205769,0.000003643832,0.000007997718,0.0001667201,0.000005031827,0.000218455],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004262499,"threshold_uncertainty_score":0.001425982,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02103219573963405,"score_gpt":0.283598376476004,"score_spread":0.2625661807363699,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}