{"id":"W2049164844","doi":"10.1016/j.virusres.2014.04.006","title":"Characterization of complete genome and small RNA profile of pagoda yellow mosaic associated virus, a novel badnavirus in China","year":2014,"lang":"en","type":"article","venue":"Virus Research","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Mosaic; Virology; Pagoda; Genome; Genetics; RNA; China; Virus; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001195751,0.0003085798,0.0003442082,0.0009034946,0.0004178416,0.000344751,0.0001884036,0.0001950628,0.0004030969],"category_scores_gemma":[0.0002174803,0.0001928765,0.0003504585,0.000632705,0.0002827958,0.0002996678,0.0002386495,0.0002941352,0.0001408761],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004470009,"about_ca_system_score_gemma":0.000597531,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008890309,"about_ca_topic_score_gemma":0.0085223,"domain_scores_codex":[0.999892,0.000005397487,0.000006268125,0.00004014522,0.00003194798,0.00002413281],"domain_scores_gemma":[0.9997576,0.00003522414,0.00005043379,0.00001642126,0.00006381561,0.0000765991],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001547457,0.00001969011,0.03894067,0.00008729119,0.00002586546,0.0001709235,0.000338745,0.0002289948,0.9555792,0.0001096175,0.00009575375,0.004248593],"study_design_scores_gemma":[0.0000214083,0.0003839231,0.9407465,0.0000120514,0.000106238,0.0007450622,0.0004391331,0.001664375,0.05100724,0.0002234435,0.004622483,0.00002817681],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997188,0.0004330321,0.0007123149,0.00002316947,0.000007321786,0.00001172046,0.001108899,0.00001058801,0.0005048856],"genre_scores_gemma":[0.9914019,0.0003757287,0.001037355,0.00006866531,0.00001702207,0.00002414866,0.0057348,0.00001435443,0.001326051],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008890309,"threshold_uncertainty_score":0.01767713,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09762539746364353,"score_gpt":0.2985213668969715,"score_spread":0.2008959694333279,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}