{"id":"W2049370749","doi":"10.1016/j.meegid.2011.07.022","title":"Population genetics, taxonomy, phylogeny and evolution of Borrelia burgdorferi sensu lato","year":2011,"lang":"en","type":"review","venue":"Infection Genetics and Evolution","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":280,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; Agricultural Research Service; Public Health Agency of Canada; National Institutes of Health; Public Health Agency; Wellcome Trust; Centers for Disease Control and Prevention; U.S. Department of Agriculture","keywords":"Biology; Multilocus sequence typing; Sensu; Phylogenetics; Phylogenetic tree; Taxonomy (biology); Evolutionary biology; Borrelia burgdorferi; Borrelia; Population; Locus (genetics); Typing; Zoology; Genetics; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000238522,0.0005157841,0.001050815,0.0005166846,0.0002606617,0.00002683673,0.0000916832,0.0009764605,0.00007353538],"category_scores_gemma":[0.00007220321,0.0005143802,0.0002725419,0.0003050796,0.0002754804,0.00008003657,0.0001474435,0.0003576209,0.00006839609],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003398051,"about_ca_system_score_gemma":0.0001723592,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002515421,"about_ca_topic_score_gemma":0.0003289025,"domain_scores_codex":[0.9977112,0.0003802284,0.0008405821,0.0006378709,0.00006031764,0.0003698454],"domain_scores_gemma":[0.9984764,0.00007363709,0.0007433584,0.0004139889,0.0002210108,0.00007155898],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006614613,0.0003963678,0.1940327,0.006123942,0.001124555,0.000001794646,0.00007494331,0.00005831359,0.0009384397,0.002647484,0.0008669599,0.7936684],"study_design_scores_gemma":[0.0006386203,0.0005199462,0.3412334,0.00124238,0.002104357,0.000322394,0.00001303875,0.0000476831,0.00006669025,0.0007064855,0.6523474,0.0007575541],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.04814601,0.9477667,0.001293697,0.000001746696,0.001435705,0.0009766038,0.0001590061,0.00009679998,0.0001237344],"genre_scores_gemma":[0.3001836,0.69916,0.00005432714,0.000003334721,0.0001206728,0.00009401602,0.0002711656,0.00004228664,0.00007056638],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7929108,"threshold_uncertainty_score":0.9997308,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02930105878944336,"score_gpt":0.2602133273258779,"score_spread":0.2309122685364346,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}