{"id":"W2049370749","doi":"10.1016/j.meegid.2011.07.022","title":"Population genetics, taxonomy, phylogeny and evolution of Borrelia burgdorferi sensu lato","year":2011,"lang":"en","type":"review","venue":"Infection Genetics and Evolution","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":280,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; Agricultural Research Service; Public Health Agency of Canada; National Institutes of Health; Public Health Agency; Wellcome Trust; Centers for Disease Control and Prevention; U.S. Department of Agriculture","keywords":"Biology; Multilocus sequence typing; Sensu; Phylogenetics; Phylogenetic tree; Taxonomy (biology); Evolutionary biology; Borrelia burgdorferi; Borrelia; Population; Locus (genetics); Typing; Zoology; Genetics; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007981768,0.0007600395,0.001173749,0.001543608,0.0002231734,0.001040248,0.001010831,0.001096262,0.001491357],"category_scores_gemma":[0.0008515607,0.0003014573,0.0002326471,0.002380305,0.0007230683,0.001303307,0.0005528693,0.001072545,0.000790656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006666979,"about_ca_system_score_gemma":0.00107399,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002324115,"about_ca_topic_score_gemma":0.002958157,"domain_scores_codex":[0.9997931,0.00003090145,0.00002443415,0.00005730486,0.00007172718,0.00002251873],"domain_scores_gemma":[0.9995574,0.0001666123,0.00009855989,0.00001408786,0.0001150317,0.00004832114],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006429596,0.00002766353,0.0007051197,0.004009965,0.00004007454,0.0001118559,0.00005726984,0.0003214798,0.001884957,0.001515303,0.01343512,0.9778269],"study_design_scores_gemma":[0.0000228429,0.0001072008,0.006277849,0.001931877,0.0001277374,0.001682875,0.0001158988,0.000180642,0.0006263404,0.002592719,0.9863032,0.00003080528],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003073463,0.9987759,0.0001543736,0.0002590508,0.0001312565,0.000001552211,0.00001541918,0.000003971335,0.0003511785],"genre_scores_gemma":[0.001469358,0.9973464,0.0002578331,0.000150461,0.0003245472,0.000002809772,0.00005153638,0.0000012984,0.0003957018],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002324115,"threshold_uncertainty_score":0.004989147,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02930105878944336,"score_gpt":0.2602133273258779,"score_spread":0.2309122685364346,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}