{"id":"W2049405699","doi":"10.1093/molbev/msi226","title":"The Comparison of the Confidence Regions in Phylogeny","year":2005,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Atlantic","keywords":"Nonparametric statistics; Confidence interval; Biology; Statistics; Parametric statistics; Tree (set theory); Statistical hypothesis testing; Cutoff; Mathematics; Taxon; Distribution (mathematics); Econometrics; Ecology; Combinatorics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009802094,0.00005403844,0.00006061114,0.00001376706,0.00012641,0.000003777654,0.0001264169,0.0001160545,0.000002047689],"category_scores_gemma":[0.00005775458,0.00003528276,0.00003476964,0.00006101504,0.0002214439,0.000001206855,0.00007720564,0.0000646117,0.000001076334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005946557,"about_ca_system_score_gemma":0.00002038692,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002897102,"about_ca_topic_score_gemma":0.000275775,"domain_scores_codex":[0.9995324,0.00009999189,0.0001141569,0.000119123,0.000036828,0.00009751797],"domain_scores_gemma":[0.9997097,0.0000106493,0.00006028509,0.0001746327,0.00002952361,0.00001523855],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004598783,0.00001944858,0.2139555,0.000003537494,0.00002016447,1.282742e-7,0.0001013338,0.0008517933,0.7165895,0.06603753,0.000478131,0.001896951],"study_design_scores_gemma":[0.0006080811,0.0001463018,0.7562413,0.00001293545,0.00002577143,0.00001480394,0.0003110014,0.0005404658,0.1803981,0.01568788,0.04584673,0.0001667001],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883623,0.002961919,0.007407702,0.000841613,0.00008670118,0.00008880837,0.000004971121,0.00000180653,0.0002442087],"genre_scores_gemma":[0.9995359,0.00006723416,0.0001511647,0.0001139793,0.00002669587,0.000002475456,0.00001116653,0.000001972942,0.00008940644],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5422857,"threshold_uncertainty_score":0.1438789,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009223713467112236,"score_gpt":0.2725710004488096,"score_spread":0.2633472869816973,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}