{"id":"W2049573711","doi":"10.1111/j.1574-695x.2009.00645.x","title":"Autoactivation of the AggR regulator of enteroaggregative<i>Escherichia coli in vitro</i>and<i>in vivo</i>","year":2009,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Enteroaggregative Escherichia coli; Biology; Fimbria; DNA footprinting; Regulator; Primer extension; Virulence; Microbiology; Escherichia coli; Plasmid; Response regulator; Transcriptional regulation; Luciferase; Molecular biology; Promoter; Genetics; Gene; Enterobacteriaceae; Gene expression; Nucleotide; Transfection; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004641037,0.0001700131,0.0004254936,0.000093706,0.00003636162,0.000001941703,0.0004090621,0.0004571298,0.00002412628],"category_scores_gemma":[0.0009560902,0.0001283297,0.00007947195,0.0002662695,0.001140282,0.000004371136,0.0003182685,0.0003833546,7.039698e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003302344,"about_ca_system_score_gemma":0.000193409,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001165867,"about_ca_topic_score_gemma":0.0001497746,"domain_scores_codex":[0.9982653,0.0004625298,0.0004861872,0.0003375967,0.0000885094,0.0003598479],"domain_scores_gemma":[0.9992313,0.00009723385,0.0002260677,0.000329607,0.00007709674,0.00003874267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005180332,0.0001894797,0.005396133,0.00001474024,0.00006926071,0.000002485957,0.0001694025,0.000001476562,0.9919158,0.00006825296,0.0001393483,0.001515597],"study_design_scores_gemma":[0.001397433,0.0003858214,0.09887657,0.00007729124,0.000006440163,0.00002048881,0.00009486076,0.0000173994,0.8957254,0.0001235768,0.003170841,0.0001038818],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944983,0.003033194,0.00002666627,0.001810533,0.0001539405,0.0002818334,0.00001656353,0.000005138951,0.0001738643],"genre_scores_gemma":[0.9983324,0.0008085704,0.0001723747,0.0004916567,0.00003223135,0.0000217577,0.00001716418,0.000009009997,0.0001148792],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0961904,"threshold_uncertainty_score":0.5233135,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005535061424848674,"score_gpt":0.2398008406666449,"score_spread":0.2342657792417963,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}