{"id":"W2049699895","doi":"10.1093/nar/gkl770","title":"TBestDB: a taxonomically broad database of expressed sequence tags (ESTs)","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"","keywords":"GenBank; Biology; Expressed sequence tag; Annotation; Sequence database; Database; Sequence (biology); Information retrieval; Bioinformatics; Genetics; Gene; Computer science; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00143587,0.002072213,0.002394498,0.005349128,0.001744353,0.004028629,0.003404167,0.001163283,0.02363309],"category_scores_gemma":[0.002272312,0.00108383,0.001326729,0.009257852,0.0003850464,0.00225309,0.002020489,0.002157508,0.03406103],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001087745,"about_ca_system_score_gemma":0.002895773,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007129059,"about_ca_topic_score_gemma":0.005476957,"domain_scores_codex":[0.9989718,0.00009343962,0.0001993791,0.0002562951,0.0003061343,0.0001729931],"domain_scores_gemma":[0.9984598,0.0002540658,0.0002133591,0.0002882206,0.0005100608,0.000274482],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00259956,0.0003126912,0.005156768,0.004522414,0.0002755409,0.0008763075,0.0004740979,0.00215638,0.1328838,0.005858313,0.6986074,0.1462767],"study_design_scores_gemma":[0.0002267493,0.0001805396,0.009603299,0.0005077784,0.0002469341,0.001212668,0.0003399036,0.004203905,0.04118389,0.004586173,0.9375291,0.0001791476],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.01094278,0.003089758,0.03294932,0.0003992818,0.0002915416,0.0001736891,0.9159569,0.02509845,0.01109831],"genre_scores_gemma":[0.004557972,0.001179596,0.01508976,0.0001083069,0.00002755595,0.0001552351,0.9746234,0.001035901,0.003222305],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.02363309,"threshold_uncertainty_score":0.07906055,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06768841515488871,"score_gpt":0.3499796287214713,"score_spread":0.2822912135665825,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}