{"id":"W2049730817","doi":"10.1016/j.humimm.2009.12.007","title":"A census of predicted mutational epitopes suitable for immunologic cancer control","year":2010,"lang":"en","type":"article","venue":"Human Immunology","topic":"vaccines and immunoinformatics approaches","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University; BC Cancer Agency","funders":"Canadian Institutes of Health Research; Genome British Columbia; Genome Canada","keywords":"Epitope; Human leukocyte antigen; Biology; KRAS; Antigen; Immunology; Immune system; Gene; Genetics; Mutation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004181686,0.0003024813,0.0004298814,0.001046836,0.0003102092,0.0006802535,0.0002764796,0.000293543,0.004649656],"category_scores_gemma":[0.001335033,0.0001965358,0.0003162918,0.0008769429,0.0002071,0.0005569174,0.0003233239,0.000422827,0.0008692105],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001586315,"about_ca_system_score_gemma":0.0002806216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002516034,"about_ca_topic_score_gemma":0.0002833183,"domain_scores_codex":[0.9997594,0.00004927705,0.00001593853,0.00007065313,0.00006291328,0.00004173933],"domain_scores_gemma":[0.9991032,0.0004684479,0.0001198906,0.0001233711,0.00009361139,0.00009152682],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003782081,0.0004791263,0.1205864,0.0005862893,0.000329188,0.001130553,0.0002573072,0.03502653,0.6294678,0.01787526,0.004298352,0.1861811],"study_design_scores_gemma":[0.0003760732,0.003070069,0.4060341,0.0001380237,0.0008891654,0.006666859,0.0006643619,0.2305912,0.2487516,0.05575449,0.04694701,0.0001171139],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9852351,0.0008248008,0.007428774,0.0000735812,0.000007124348,0.00001674055,0.003155666,0.0001406305,0.003117577],"genre_scores_gemma":[0.9896947,0.0003793927,0.00429341,0.00003885025,0.000009317091,0.0000210637,0.004829513,0.00004474141,0.0006889492],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004649656,"threshold_uncertainty_score":0.01555467,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01294606091896971,"score_gpt":0.266055072953324,"score_spread":0.2531090120343543,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}