{"id":"W2049869189","doi":"10.1371/journal.pone.0016759","title":"Evidence for the Role of Horizontal Transfer in Generating pVT1, a Large Mosaic Conjugative Plasmid from the Clam Pathogen, Vibrio tapetis","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agence Universitaire de la Francophonie; Agence Nationale de la Recherche","keywords":"Biology; Plasmid; Microbiology; Vibrio vulnificus; Replicon; Vibrio; Vibrio Infections; Vibrionaceae; Vibrio cholerae; Horizontal gene transfer; Genetics; Mobile genetic elements; Bacteria; Gene; Genome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003051051,0.0001327305,0.0001948669,0.00001400844,0.0001245327,0.00001552096,0.0003027978,0.00007778159,0.00004112992],"category_scores_gemma":[0.0004547291,0.00008461611,0.00008008545,0.00006605483,0.0001364692,0.000008309326,0.0001417496,0.0001136903,0.000003005568],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001465473,"about_ca_system_score_gemma":0.0000690245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002603704,"about_ca_topic_score_gemma":0.00166593,"domain_scores_codex":[0.9989176,0.0001282081,0.0002186643,0.000270697,0.0001866111,0.0002782326],"domain_scores_gemma":[0.999272,0.0002335987,0.00004644658,0.0002970537,0.00011779,0.00003305252],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003881178,0.0002279247,0.01151674,0.00001723003,0.0003104684,9.416501e-7,0.001459226,5.962726e-7,0.9854975,0.00005076042,0.00004909713,0.000481374],"study_design_scores_gemma":[0.0006318988,0.0005533075,0.009395692,0.0001329207,0.00007059902,4.322531e-7,0.0008631892,0.0005984021,0.9871731,0.00006842562,0.0003952295,0.0001168116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923437,0.005275071,0.0006545199,0.000157087,0.00002144153,0.0007018146,0.0007778347,0.000005208246,0.00006334265],"genre_scores_gemma":[0.9966567,0.001150979,0.001474987,0.00009868031,0.0001734655,0.0003200913,0.00008571017,0.00001887922,0.00002051712],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004313011,"threshold_uncertainty_score":0.3450545,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08898486065791829,"score_gpt":0.2647773757047054,"score_spread":0.1757925150467871,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}