{"id":"W2049869189","doi":"10.1371/journal.pone.0016759","title":"Evidence for the Role of Horizontal Transfer in Generating pVT1, a Large Mosaic Conjugative Plasmid from the Clam Pathogen, Vibrio tapetis","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agence Universitaire de la Francophonie; Agence Nationale de la Recherche","keywords":"Biology; Plasmid; Microbiology; Vibrio vulnificus; Replicon; Vibrio; Vibrio Infections; Vibrionaceae; Vibrio cholerae; Horizontal gene transfer; Genetics; Mobile genetic elements; Bacteria; Gene; Genome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001629386,0.0002985268,0.0001299956,0.0005155464,0.0002508333,0.0003177419,0.0001818348,0.0003363461,0.001067198],"category_scores_gemma":[0.0006764653,0.0001056383,0.0002079921,0.0002944463,0.0002841913,0.0002171055,0.0003891145,0.0003841326,0.0002530847],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001881062,"about_ca_system_score_gemma":0.0004108934,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000624456,"about_ca_topic_score_gemma":0.0002982961,"domain_scores_codex":[0.9998492,0.00001832001,0.00001086852,0.00003935914,0.00005194693,0.0000302266],"domain_scores_gemma":[0.9994949,0.0001482936,0.0001422078,0.00004517479,0.00007161722,0.00009767754],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001825337,0.00004506372,0.01749635,0.0002064694,0.00001508326,0.0003857321,0.0001138913,0.0000960028,0.9735798,0.000386367,0.0000354522,0.007457141],"study_design_scores_gemma":[0.00006743317,0.001203465,0.3184182,0.00009789009,0.0001367964,0.007630267,0.0004757776,0.002096472,0.663712,0.0008105396,0.005325165,0.00002609241],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968761,0.0006438761,0.001562722,0.0000693139,0.000007426385,0.00001483401,0.0001374439,0.00001759478,0.0006707165],"genre_scores_gemma":[0.9976658,0.0003444755,0.001030732,0.00001635012,0.000007683844,0.00000847297,0.000530946,0.000004940425,0.0003905996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001067198,"threshold_uncertainty_score":0.003570139,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08898486065791829,"score_gpt":0.2647773757047054,"score_spread":0.1757925150467871,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}