{"id":"W2049987147","doi":"10.1371/journal.pone.0050070","title":"Comparative Genomic and Phylogenetic Approaches to Characterize the Role of Genetic Recombination in Mycobacterial Evolution","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic; Canada Research Chairs","keywords":"Biology; Phylogenetic tree; Horizontal gene transfer; Phylogenetics; Genetics; Lineage (genetic); Genome; Genome evolution; Comparative genomics; Evolutionary biology; Recombination; Gene; Genomics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002810467,0.0005907265,0.000853192,0.007086114,0.001486128,0.001222044,0.0008071543,0.000823359,0.001600979],"category_scores_gemma":[0.006600216,0.0003473796,0.001117086,0.008341618,0.0007697447,0.0008765557,0.001161929,0.001891056,0.0004380644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007870777,"about_ca_system_score_gemma":0.0006564345,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001951716,"about_ca_topic_score_gemma":0.00322456,"domain_scores_codex":[0.9979844,0.001017764,0.0001633588,0.0004662811,0.0002171726,0.0001510059],"domain_scores_gemma":[0.9976656,0.001321555,0.0004175013,0.0002269608,0.0001577101,0.0002107243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003165113,0.001564655,0.2003303,0.003423618,0.003442549,0.002752831,0.008890298,0.04246233,0.5205665,0.03204532,0.001755203,0.1796014],"study_design_scores_gemma":[0.0002705218,0.003085115,0.6469137,0.0006188669,0.001841151,0.003744961,0.007415791,0.2321013,0.02738653,0.03911328,0.03719845,0.0003103702],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9085312,0.004315066,0.07677218,0.0002804436,0.00005513894,0.0002989241,0.003815552,0.000272724,0.005658731],"genre_scores_gemma":[0.8726279,0.001387594,0.120231,0.0001519229,0.0000465263,0.0003447393,0.004765498,0.00009158387,0.0003533434],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007086114,"threshold_uncertainty_score":0.01486331,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1427844983753759,"score_gpt":0.2589218642254159,"score_spread":0.1161373658500399,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}