{"id":"W2050057383","doi":"10.1371/journal.pgen.1002380","title":"A High-Resolution Whole-Genome Map of Key Chromatin Modifications in the Adult Drosophila melanogaster","year":2011,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Hospital","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Cancer Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Euchromatin; Heterochromatin; Chromatin; Genetics; Chromatin immunoprecipitation; Epigenomics; Drosophila melanogaster; Histone; Epigenetics; Histone code; Computational biology; Nucleosome; Gene; Gene expression; DNA methylation; Promoter","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000644719,0.0002009636,0.0001578543,0.0004825194,0.0002340307,0.0002361721,0.000169129,0.0001818936,0.001181785],"category_scores_gemma":[0.00008262502,0.0002404809,0.000231659,0.0002514142,0.000106415,0.0001357282,0.0001877634,0.0002951841,0.0004791954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002684204,"about_ca_system_score_gemma":0.000264352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002827068,"about_ca_topic_score_gemma":0.007313041,"domain_scores_codex":[0.999966,0.000001991865,0.000001477243,0.00001680367,0.000009781136,0.000003948576],"domain_scores_gemma":[0.9999372,0.00001232336,0.00001358523,0.000009090955,0.00001137507,0.00001653321],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004961871,0.000007987269,0.001613984,0.00007535633,0.00001787933,0.00006549463,0.00003913486,0.0004645904,0.9911131,0.0002684527,0.0002913988,0.005993038],"study_design_scores_gemma":[0.00005185467,0.0002290315,0.3828644,0.00005714975,0.0001155268,0.001354986,0.0001820195,0.007895598,0.5710166,0.001533,0.03465687,0.00004292218],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9285254,0.003344805,0.04821764,0.0002895859,0.00002453533,0.00006262169,0.01361536,0.0006557638,0.005264268],"genre_scores_gemma":[0.8945114,0.002520652,0.07880732,0.0002506664,0.00002159752,0.0001109961,0.01718809,0.0001814093,0.006407854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002827068,"threshold_uncertainty_score":0.005621195,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01840206058880216,"score_gpt":0.2066846985698889,"score_spread":0.1882826379810867,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}