{"id":"W2050099732","doi":"10.1016/j.eururo.2014.07.045","title":"Next-generation RNA Sequencing of Archival Formalin-fixed Paraffin-embedded Urothelial Bladder Cancer","year":2014,"lang":"en","type":"letter","venue":"European Urology","topic":"Bladder and Urothelial Cancer Treatments","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":false,"ca_institutions":"Toronto General Hospital; Lunenfeld-Tanenbaum Research Institute; University Health Network; Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Transcriptome; Bladder cancer; Concordance; Medicine; RNA; Computational biology; RNA-Seq; Gene; Biology; Cancer; Gene expression; Genetics; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00113927,0.0002361126,0.0004343081,0.0003758476,0.0006899287,0.0007707943,0.0004862095,0.003276659,0.001646571],"category_scores_gemma":[0.004529487,0.0002264255,0.0002972837,0.0002184319,0.0003716927,0.0003314587,0.0002362529,0.002554166,0.0008455954],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006121382,"about_ca_system_score_gemma":0.000628604,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001550952,"about_ca_topic_score_gemma":0.004792883,"domain_scores_codex":[0.9993194,0.0002149018,0.00008173149,0.00007699491,0.0001987389,0.0001082376],"domain_scores_gemma":[0.9983423,0.0009582553,0.00004949623,0.0001333651,0.0004054955,0.0001110799],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002549754,0.0003798069,0.03604982,0.0007560052,0.000195122,0.04181009,0.002040907,0.002185993,0.1409812,0.004698983,0.45745,0.3109023],"study_design_scores_gemma":[0.000361311,0.001111359,0.04263231,0.0005941998,0.0004437654,0.04514805,0.002257707,0.01646866,0.09618797,0.02040972,0.7742784,0.0001065698],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.3118532,0.01600075,0.03016585,0.5665986,0.03173623,0.0006039197,0.003829878,0.000680727,0.0385309],"genre_scores_gemma":[0.6273077,0.01021858,0.02802957,0.2797901,0.01321985,0.0005839858,0.002938687,0.0002176054,0.03769395],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.003276659,"threshold_uncertainty_score":0.006025076,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0750362743545373,"score_gpt":0.293023078256618,"score_spread":0.2179868039020807,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}