{"id":"W2050393912","doi":"10.1002/jez.b.21420","title":"<i>Hox</i>clusters of the bichir (Actinopterygii,<i>Polypterus senegalus</i>) highlight unique patterns of sequence evolution in gnathostome phylogeny","year":2011,"lang":"en","type":"article","venue":"Journal of Experimental Zoology Part B Molecular and Developmental Evolution","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre","funders":"Deutsche Forschungsgemeinschaft; Massachusetts Institute of Technology; National Science Foundation","keywords":"Hox gene; Biology; Actinopterygii; Evolutionary biology; Genome; Lineage (genetic); Phylogenetics; Gene duplication; Genetics; Gene; Fish <Actinopterygii>; Transcription factor; Fishery","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005525195,0.0001963396,0.0001583403,0.0005551705,0.0003053661,0.0002392154,0.000128256,0.0001246887,0.001805949],"category_scores_gemma":[0.0001633287,0.0001117247,0.0001642265,0.0004538138,0.0001613681,0.000161959,0.0002474631,0.0002236389,0.000457105],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001290759,"about_ca_system_score_gemma":0.0001638675,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001362043,"about_ca_topic_score_gemma":0.003898249,"domain_scores_codex":[0.9999367,0.000005563666,0.000005784118,0.00002547392,0.00001470705,0.00001177736],"domain_scores_gemma":[0.9998647,0.00001975063,0.00006084633,0.0000109697,0.00001694971,0.00002681144],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002794268,0.0000278733,0.06180913,0.0002722605,0.00006456715,0.0003514716,0.000431982,0.000374883,0.9120447,0.0003607461,0.0002792302,0.02370373],"study_design_scores_gemma":[0.00001293676,0.0002136278,0.90394,0.00007323414,0.00009499444,0.002103511,0.0004864547,0.0009641495,0.07573301,0.0002878638,0.01606571,0.00002455229],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963644,0.0004310501,0.0009350987,0.000025491,0.000003797375,0.00000781065,0.00103346,0.00003243973,0.001166365],"genre_scores_gemma":[0.9875695,0.0004698296,0.004173216,0.00006357318,0.000009838471,0.00003218922,0.005506255,0.00002731627,0.002148323],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001805949,"threshold_uncertainty_score":0.006041527,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01194722772627616,"score_gpt":0.2321557751018874,"score_spread":0.2202085473756112,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}