{"id":"W2050607964","doi":"10.1186/1471-2164-8-334","title":"Gene discovery and transcript analyses in the corn smut pathogen Ustilago maydis: expressed sequence tag and genome sequence comparison","year":2007,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"Trent University; Hospital for Sick Children; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Ustilago; Biology; Genetics; Gene; Genome; Expressed sequence tag; Genome project; Intron; Sequence analysis; Whole genome sequencing; Smut; RNA splicing; RNA; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005152001,0.0002030523,0.0002055859,0.00006923849,0.0001104999,0.0001145728,0.0003368898,0.0001411367,0.000003186776],"category_scores_gemma":[0.00004202453,0.0001612062,0.00005709979,0.000134098,0.0002398327,0.00001023249,0.0001400021,0.000163682,0.000002404176],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002656402,"about_ca_system_score_gemma":0.0001138206,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000921063,"about_ca_topic_score_gemma":0.0005406064,"domain_scores_codex":[0.998512,0.0001099313,0.0003053882,0.0004747556,0.0001843265,0.000413542],"domain_scores_gemma":[0.9993402,0.00005024704,0.00006645555,0.0003818442,0.00004749339,0.0001137468],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001558961,0.00004393663,0.01211143,0.00004265236,0.00001756636,0.00001737114,0.0005226838,0.0004026433,0.9861054,0.0000164599,0.00002035453,0.0005435997],"study_design_scores_gemma":[0.0007692095,0.0002842952,0.04503712,0.00001446039,0.0000431095,0.00007879868,0.001847251,0.0009272721,0.9456316,0.0001526945,0.004806461,0.0004077498],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894937,0.00591333,0.003797721,0.00005468128,0.00005234455,0.0002989459,0.0002391968,0.000005212429,0.0001448209],"genre_scores_gemma":[0.9958124,0.001280488,0.002208641,0.0001767465,0.0001274304,0.00001672025,0.0001831273,0.00002154197,0.0001729127],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04047383,"threshold_uncertainty_score":0.6573799,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09650480318803564,"score_gpt":0.3474635772481319,"score_spread":0.2509587740600963,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}