{"id":"W2051120434","doi":"10.1534/g3.112.003871","title":"Allele Identification for Transcriptome-Based Population Genomics in the Invasive Plant<i>Centaurea solstitialis</i>","year":2013,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Population genomics; Genomics; Population; Transcriptome; Identification (biology); Computational biology; Genetics; Genome; Evolutionary biology; DNA sequencing; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009730685,0.0004792228,0.0004450472,0.0008882521,0.0004555302,0.0007883147,0.0005065879,0.000354558,0.002421376],"category_scores_gemma":[0.001535378,0.000329674,0.000712788,0.0007798612,0.0002642719,0.0004502866,0.0008344015,0.001045438,0.001196121],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003902138,"about_ca_system_score_gemma":0.0005075657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001221411,"about_ca_topic_score_gemma":0.003773549,"domain_scores_codex":[0.9996368,0.00003807619,0.00002233351,0.0001876751,0.00007808421,0.00003710289],"domain_scores_gemma":[0.9995112,0.0001702236,0.0001231593,0.00009023683,0.0000637418,0.00004136741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002714198,0.00007339576,0.01309319,0.0003684248,0.0001059405,0.0002206749,0.0005848022,0.001456549,0.9206833,0.001209287,0.002078392,0.0598546],"study_design_scores_gemma":[0.0001257591,0.0003799168,0.1972473,0.0001082989,0.0003046491,0.001219198,0.0004162253,0.06003562,0.6894634,0.004804406,0.04577129,0.0001239788],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6498423,0.0005607955,0.3121633,0.0003302445,0.00009628135,0.0002374531,0.01979923,0.01280195,0.004168422],"genre_scores_gemma":[0.6554748,0.0003039371,0.304435,0.0002521537,0.00003512983,0.0003630227,0.03346165,0.003299429,0.002374887],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002421376,"threshold_uncertainty_score":0.008100331,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01693489988077542,"score_gpt":0.2302046094140963,"score_spread":0.2132697095333209,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}