{"id":"W2051120434","doi":"10.1534/g3.112.003871","title":"Allele Identification for Transcriptome-Based Population Genomics in the Invasive Plant<i>Centaurea solstitialis</i>","year":2013,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Population genomics; Genomics; Population; Transcriptome; Identification (biology); Computational biology; Genetics; Genome; Evolutionary biology; DNA sequencing; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002023368,0.0002209814,0.0001656972,0.00009030167,0.0001872058,0.000117703,0.0004424225,0.0002173236,0.00004149809],"category_scores_gemma":[0.000008462737,0.0002025438,0.00013312,0.0001337191,0.00005678248,0.000009068355,0.00003968793,0.00007244414,0.00001949898],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003087282,"about_ca_system_score_gemma":0.00008791026,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000966312,"about_ca_topic_score_gemma":0.0004879381,"domain_scores_codex":[0.9985912,0.0001002272,0.0003788144,0.0004040637,0.0002020405,0.0003236596],"domain_scores_gemma":[0.9991453,0.00002885011,0.0001545803,0.0004701407,0.0001326582,0.00006847254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001545709,0.0001461684,0.08831197,0.0001641861,0.000108471,0.000001913442,0.001365631,0.03923728,0.7013434,0.000238022,0.007869288,0.1610592],"study_design_scores_gemma":[0.003568261,0.0005094734,0.2041792,0.0000175358,0.0002003862,0.00002722811,0.002017558,0.003231134,0.165723,0.002187946,0.6171621,0.001176219],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9627585,0.02731284,0.006778175,0.0005373462,0.0003972315,0.001717589,0.0003754069,0.00001601586,0.0001069143],"genre_scores_gemma":[0.9857274,0.004992038,0.002595338,0.001203686,0.0003179928,0.0001524371,0.004834061,0.00002898222,0.0001480251],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6092928,"threshold_uncertainty_score":0.8259497,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01693489988077542,"score_gpt":0.2302046094140963,"score_spread":0.2132697095333209,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}