{"id":"W2051499965","doi":"10.1371/journal.pone.0089462","title":"Evidence That HIV-1 CRF01_AE Is Associated with Low CD4+T Cell Count and CXCR4 Co-Receptor Usage in Recently Infected Young Men Who Have Sex with Men (MSM) in Shanghai, China","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fogarty International Center; School of Medicine, New York University; National Science and Technology Major Project; York University","keywords":"Men who have sex with men; Tropism; Virology; Biology; Population; Tissue tropism; Subtyping; CXCR4; Lentivirus; Human immunodeficiency virus (HIV); Demography; Immunology; Immune system; Virus; Viral disease; Chemokine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004528828,0.0002662615,0.0002337593,0.0007386169,0.000407915,0.0003900874,0.0002665246,0.0003037251,0.001390664],"category_scores_gemma":[0.001040273,0.0002415421,0.0002697197,0.0007569892,0.0004076227,0.0002070546,0.0002518609,0.0002549935,0.0001242596],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001877636,"about_ca_system_score_gemma":0.0003280159,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01939315,"about_ca_topic_score_gemma":0.01833676,"domain_scores_codex":[0.9997489,0.0000727869,0.0000317569,0.00004985254,0.00004300226,0.0000536915],"domain_scores_gemma":[0.9988425,0.0002065144,0.0004883411,0.00007375629,0.000144388,0.0002444713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003085455,0.000004366738,0.9991844,0.000005619803,0.00001041572,0.00006271045,0.00005694364,0.000009288721,0.0002114315,0.000003985653,0.00002383477,0.0003960264],"study_design_scores_gemma":[0.000001047835,0.00001883534,0.9996793,0.000001706169,0.000007336467,0.0001276966,0.0000755571,0.00004135724,0.00001741523,0.000002645756,0.00002625441,9.864273e-7],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996952,0.0001035546,0.00001784851,0.00001835531,0.000002034697,0.000001150826,0.00004998349,0.000001042611,0.0001109804],"genre_scores_gemma":[0.9997959,0.00004991311,0.00001898275,0.00001151565,0.000005547276,8.671518e-7,0.00007245857,4.364307e-7,0.00004444824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01939315,"threshold_uncertainty_score":0.03856051,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02120640203154403,"score_gpt":0.2311933883485875,"score_spread":0.2099869863170435,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}